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The map label for this gene is dcrA [H]

Identifier: 83311295

GI number: 83311295

Start: 2386438

End: 2387748

Strand: Reverse

Name: dcrA [H]

Synonym: amb2196

Alternate gene names: 83311295

Gene position: 2387748-2386438 (Counterclockwise)

Preceding gene: 83311296

Following gene: 83311293

Centisome position: 48.07

GC content: 57.59

Gene sequence:

>1311_bases
ATGGAATCGACTCTCGGCTCATATGCCCGAACCTTATCCCTTGGGATGCTGGTTCCTTCGGCGATCTGCTTACTGGCGGG
AACATTCGGGCTGCTTGGTGGTTCGAGCATCGCCCTTTGGGTCGTGATCACGGTATCCCTGATTGGCGTTGTCGGAGGCG
TCAAGATCGGTGGTTCTGCTCGACGAATGGCAGGTGATCTGTCCACTGCGATCCACGTGCTCAGCCGGTCCGCCAGTGGT
GATCTCAACGCTCGGATTCTGGACGTTCGAGGCAGCGATGGCATTGGAGCCTTGCAACGCAGCATCAACCGTTTGCTGGA
CCTCGCTGAAGCCTTTGGAAAAGAGGCGTTTGCCGCCGTCGAGTCCGCAAATCATGGTCGGTATTACCGCCGGATCATCA
CCACGGGTTTGCGTGGCGATTTCGTTCTGTACGCCAAGACCATCAATCACGCTTTGAAGCGAATGGAAGCCAGAGACGCA
GAGTTCATCGCCTTTGCCAACAATCAGGTAAAGCCGGTCGTGAACGCCGTGGCTGCCGCAGCGACAGAATTGGAAGCATC
TTCGGGGGCCATGTCGGCACAGTCCACCGACACCAGCCACCAAGCCATGACGGTTGCCGCAGCGGCAGAACAAGCCTCGG
TCAACGTCCAGGCCGTGGCCTCTGCTGTGGAGGAGTTCTCCGCCTCCATTAAGGAAATCAGTGCCCAGGTCCATCGTGCT
GCCGCCGTAGCCTCCGAAGCAGCCGGTGTCGCGTCTCGTACCGATACGACGGTCCATGGCCTCAATGAGGCCGCCGAACG
AATTGGTGCCATTGTCAGCTTGATCAATGACATTGCCGCCCAAACCAATCTTCTGGCTCTCAATGCCACAATCGAAGCGG
CTCGTGCCGGTGATGCCGGGAAAGGCTTTGCCGTGGTGGCGAATGAGGTCAAAAACTTAGCGAACCAAACGGCCAGAGCA
ACCGAAGACATCACCTCCCAGGTGGCACATATCCAGCAGGTCGCCGCCGAAGCTATCCAGGCGATTGATGAAATCACTCG
AACCGTATCCCAGATCGAGGAAACATCCTCCGCCGTGGCCGGTGCCGTGGAAGAGCAAAATGCGGTCACCGTGGAAATCG
CACGTAATGTCGCGGAAGCTGCAACCGGAACGTCCTCGGTTTCCTCAGCGATCATCACGGTTCAAGCGACTGCCGCTGAA
GCTACAGAATCCGCTGGTCAGGTAGCTGATGCTGCATCGGAATTGTCTCGGCAGTCTGAAAATCTTAGCCGCGAGGTTGA
TGGCTTTATCGCCCGAATTGGCGGGCGGTAA

Upstream 100 bases:

>100_bases
CATGGAAAATGTTGAACGACGCCGTAGCAACGGCGGGATTTGATAGCTATGACCGATTCATCTTCACCATCACGCCAGAA
AATTGATCAGAGGCAGGCAC

Downstream 100 bases:

>100_bases
TCGGCAGAGTTCATGGAGATTTTGCTGAATGACAGAAGAATGCCAGATCGCTGGATGGTCAGACGCTTTCTCTGTCGGGA
ATGCAGCGATTGACAGCGAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MESTLGSYARTLSLGMLVPSAICLLAGTFGLLGGSSIALWVVITVSLIGVVGGVKIGGSARRMAGDLSTAIHVLSRSASG
DLNARILDVRGSDGIGALQRSINRLLDLAEAFGKEAFAAVESANHGRYYRRIITTGLRGDFVLYAKTINHALKRMEARDA
EFIAFANNQVKPVVNAVAAAATELEASSGAMSAQSTDTSHQAMTVAAAAEQASVNVQAVASAVEEFSASIKEISAQVHRA
AAVASEAAGVASRTDTTVHGLNEAAERIGAIVSLINDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTARA
TEDITSQVAHIQQVAAEAIQAIDEITRTVSQIEETSSAVAGAVEEQNAVTVEIARNVAEAATGTSSVSSAIITVQATAAE
ATESAGQVADAASELSRQSENLSREVDGFIARIGGR

Sequences:

>Translated_436_residues
MESTLGSYARTLSLGMLVPSAICLLAGTFGLLGGSSIALWVVITVSLIGVVGGVKIGGSARRMAGDLSTAIHVLSRSASG
DLNARILDVRGSDGIGALQRSINRLLDLAEAFGKEAFAAVESANHGRYYRRIITTGLRGDFVLYAKTINHALKRMEARDA
EFIAFANNQVKPVVNAVAAAATELEASSGAMSAQSTDTSHQAMTVAAAAEQASVNVQAVASAVEEFSASIKEISAQVHRA
AAVASEAAGVASRTDTTVHGLNEAAERIGAIVSLINDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTARA
TEDITSQVAHIQQVAAEAIQAIDEITRTVSQIEETSSAVAGAVEEQNAVTVEIARNVAEAATGTSSVSSAIITVQATAAE
ATESAGQVADAASELSRQSENLSREVDGFIARIGGR
>Mature_436_residues
MESTLGSYARTLSLGMLVPSAICLLAGTFGLLGGSSIALWVVITVSLIGVVGGVKIGGSARRMAGDLSTAIHVLSRSASG
DLNARILDVRGSDGIGALQRSINRLLDLAEAFGKEAFAAVESANHGRYYRRIITTGLRGDFVLYAKTINHALKRMEARDA
EFIAFANNQVKPVVNAVAAAATELEASSGAMSAQSTDTSHQAMTVAAAAEQASVNVQAVASAVEEFSASIKEISAQVHRA
AAVASEAAGVASRTDTTVHGLNEAAERIGAIVSLINDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTARA
TEDITSQVAHIQQVAAEAIQAIDEITRTVSQIEETSSAVAGAVEEQNAVTVEIARNVAEAATGTSSVSSAIITVQATAAE
ATESAGQVADAASELSRQSENLSREVDGFIARIGGR

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=263, Percent_Identity=32.6996197718631, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1789453, Length=200, Percent_Identity=37, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788195, Length=196, Percent_Identity=35.2040816326531, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1788194, Length=227, Percent_Identity=30.8370044052863, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI2367378, Length=124, Percent_Identity=39.5161290322581, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 44682; Mature: 44682

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTLGSYARTLSLGMLVPSAICLLAGTFGLLGGSSIALWVVITVSLIGVVGGVKIGGSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCH
RRMAGDLSTAIHVLSRSASGDLNARILDVRGSDGIGALQRSINRLLDLAEAFGKEAFAAV
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
ESANHGRYYRRIITTGLRGDFVLYAKTINHALKRMEARDAEFIAFANNQVKPVVNAVAAA
HCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
ATELEASSGAMSAQSTDTSHQAMTVAAAAEQASVNVQAVASAVEEFSASIKEISAQVHRA
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVASEAAGVASRTDTTVHGLNEAAERIGAIVSLINDIAAQTNLLALNATIEAARAGDAG
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCC
KGFAVVANEVKNLANQTARATEDITSQVAHIQQVAAEAIQAIDEITRTVSQIEETSSAVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAVEEQNAVTVEIARNVAEAATGTSSVSSAIITVQATAAEATESAGQVADAASELSRQSE
HHHHHCCCEEHHHHHHHHHHHCCCHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
NLSREVDGFIARIGGR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MESTLGSYARTLSLGMLVPSAICLLAGTFGLLGGSSIALWVVITVSLIGVVGGVKIGGSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCH
RRMAGDLSTAIHVLSRSASGDLNARILDVRGSDGIGALQRSINRLLDLAEAFGKEAFAAV
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
ESANHGRYYRRIITTGLRGDFVLYAKTINHALKRMEARDAEFIAFANNQVKPVVNAVAAA
HCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
ATELEASSGAMSAQSTDTSHQAMTVAAAAEQASVNVQAVASAVEEFSASIKEISAQVHRA
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVASEAAGVASRTDTTVHGLNEAAERIGAIVSLINDIAAQTNLLALNATIEAARAGDAG
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCC
KGFAVVANEVKNLANQTARATEDITSQVAHIQQVAAEAIQAIDEITRTVSQIEETSSAVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAVEEQNAVTVEIARNVAEAATGTSSVSSAIITVQATAAEATESAGQVADAASELSRQSE
HHHHHCCCEEHHHHHHHHHHHCCCHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
NLSREVDGFIARIGGR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]