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The map label for this gene is yfdE [H]

Identifier: 83311232

GI number: 83311232

Start: 2307230

End: 2308438

Strand: Reverse

Name: yfdE [H]

Synonym: amb2133

Alternate gene names: 83311232

Gene position: 2308438-2307230 (Counterclockwise)

Preceding gene: 83311233

Following gene: 83311231

Centisome position: 46.47

GC content: 69.15

Gene sequence:

>1209_bases
ATGGCCCATCCAAAGCGCCCCCTGGACGGTATTCGCGTCCTCGACATCGCCACCTTCATCGCGGCGCCCTATGCCGCCGC
CATTCTGGGCGAATTCGGTGCCGAGGTGATCAAGGTGGAGCAGCCGGGCGGCGGCGACACCTTCCGCCGCTTCGGCTCCA
TCACCGAGCGCGACGGCGATTCGCTGATGTGGCTGTCCGAGGCGCGCAACAAGAATTCGGTGACCCTGGACCTGCGCAAG
CCCGAAGGCCGCGAGCTGTTCCTCAAACTGGTGGCCCGCACCGACGTCATCGCCGAGAATTTCCGCCCCGGCACGCTCGA
GAAATGGGGACTGGGCTGGGAGGAGTTGCGCCGGGTCAATCCGGGGCTGATCCTGCTGCGCATCTCGGGCTATGGCCAGA
CCGGCCCCTACAAGGACCGCCCGGGCTTTGCCCGCATCGCCCACGCCTTCGGCGGCCTGTCCTATCTGGCCGGCATGCCG
GGCGACGTGCCGGTGACCCCCGGCTCCACCTCCCTGGCCGATTACATGAGCGGCCTTTACGGCGCCATCGGCGTGCTGCT
GGCGCTGCGGCACCGGGATGCCACCGGCGAGGGTCAGGTCATCGACCTCGCCCTGTACGAATCGGTGTTTCGTGCCCTCG
ACGAGATCGCCCCCGCCTTCGCCATGTTCGGCAAGGTGCGCGAACGTGAAGGCGCCGGCACGGTCAATGCCTGCCCCCAC
GGCCATTTCCGTTGCGGCGATGGCAAGTGGGTGGCGCTGGCCTGCACCACCGACCGCATGTTCGCCCGGCTGGCCGAGGC
CATGGAGCGCCCCGAACTGGCCGACGGCGCCAAGTGGGGATTGCTGCGCAACCGGCTGGCCGAGCGCGCCGACGTGGATG
CCCTGGTCGGCCATTGGGCCGCCACCCGCCCGCGCGAGACGGTGATGGAGCTTTGCCTGGACTTCGAGGTGCCCGCCGCC
CCGCTCAACACCATCGCCGACATCTTCGAGGACCCGCAATTCCAGGCCCGCGGCAACCTGCTGGAGGTGGCCGATGCGGT
CCTGGGCGGCGTCGTCGTGCCCGGCGTGGTCCCCAAGCTTTCGGCCACCCCCGGCCGGGTCGACCATCTCGGCCCCCGCC
TGGGCGAGGACAACGCCCGGGTTTATGGCGGGCTGCTGGGTCTCGGCGAGGCCGAGATCGCCGAGCTTAAGAGCAAAGGC
GTTATCTGA

Upstream 100 bases:

>100_bases
CTGGGCCGCCACGTGGAAACCTTCCTGGGCAGCGTCAAGACCGTGTAGCTCGGCCGAGATCGGGCATGGTATCAAGACGG
TTCATTGCCGGCGGGAGATC

Downstream 100 bases:

>100_bases
ACGCCGCATGAACCAGCGGTTCAGCTCCGGTTGGGGTGGCCTGGGGCATTCTGTCTCCAGTTCAAAGCCTCACCAACCGG
AGACCTCGCCATGTTGACCA

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MAHPKRPLDGIRVLDIATFIAAPYAAAILGEFGAEVIKVEQPGGGDTFRRFGSITERDGDSLMWLSEARNKNSVTLDLRK
PEGRELFLKLVARTDVIAENFRPGTLEKWGLGWEELRRVNPGLILLRISGYGQTGPYKDRPGFARIAHAFGGLSYLAGMP
GDVPVTPGSTSLADYMSGLYGAIGVLLALRHRDATGEGQVIDLALYESVFRALDEIAPAFAMFGKVREREGAGTVNACPH
GHFRCGDGKWVALACTTDRMFARLAEAMERPELADGAKWGLLRNRLAERADVDALVGHWAATRPRETVMELCLDFEVPAA
PLNTIADIFEDPQFQARGNLLEVADAVLGGVVVPGVVPKLSATPGRVDHLGPRLGEDNARVYGGLLGLGEAEIAELKSKG
VI

Sequences:

>Translated_402_residues
MAHPKRPLDGIRVLDIATFIAAPYAAAILGEFGAEVIKVEQPGGGDTFRRFGSITERDGDSLMWLSEARNKNSVTLDLRK
PEGRELFLKLVARTDVIAENFRPGTLEKWGLGWEELRRVNPGLILLRISGYGQTGPYKDRPGFARIAHAFGGLSYLAGMP
GDVPVTPGSTSLADYMSGLYGAIGVLLALRHRDATGEGQVIDLALYESVFRALDEIAPAFAMFGKVREREGAGTVNACPH
GHFRCGDGKWVALACTTDRMFARLAEAMERPELADGAKWGLLRNRLAERADVDALVGHWAATRPRETVMELCLDFEVPAA
PLNTIADIFEDPQFQARGNLLEVADAVLGGVVVPGVVPKLSATPGRVDHLGPRLGEDNARVYGGLLGLGEAEIAELKSKG
VI
>Mature_401_residues
AHPKRPLDGIRVLDIATFIAAPYAAAILGEFGAEVIKVEQPGGGDTFRRFGSITERDGDSLMWLSEARNKNSVTLDLRKP
EGRELFLKLVARTDVIAENFRPGTLEKWGLGWEELRRVNPGLILLRISGYGQTGPYKDRPGFARIAHAFGGLSYLAGMPG
DVPVTPGSTSLADYMSGLYGAIGVLLALRHRDATGEGQVIDLALYESVFRALDEIAPAFAMFGKVREREGAGTVNACPHG
HFRCGDGKWVALACTTDRMFARLAEAMERPELADGAKWGLLRNRLAERADVDALVGHWAATRPRETVMELCLDFEVPAAP
LNTIADIFEDPQFQARGNLLEVADAVLGGVVVPGVVPKLSATPGRVDHLGPRLGEDNARVYGGLLGLGEAEIAELKSKGV
I

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=30.9823677581864, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=29.5508274231678, Blast_Score=198, Evalue=8e-51,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=27.2040302267003, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=26.241134751773, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=27.6119402985075, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=27.4752475247525, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=36.81592039801, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=36.81592039801, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458395, Length=130, Percent_Identity=37.6923076923077, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=130, Percent_Identity=37.6923076923077, Blast_Score=90, Evalue=5e-18,
Organism=Escherichia coli, GI87082093, Length=357, Percent_Identity=34.733893557423, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=28.2296650717703, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=30.2955665024631, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI32564160, Length=268, Percent_Identity=29.1044776119403, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=267, Percent_Identity=28.8389513108614, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=33.1670822942643, Blast_Score=212, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24585488, Length=400, Percent_Identity=27.75, Blast_Score=111, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43364; Mature: 43233

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPKRPLDGIRVLDIATFIAAPYAAAILGEFGAEVIKVEQPGGGDTFRRFGSITERDGD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCC
SLMWLSEARNKNSVTLDLRKPEGRELFLKLVARTDVIAENFRPGTLEKWGLGWEELRRVN
CEEEEHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCC
PGLILLRISGYGQTGPYKDRPGFARIAHAFGGLSYLAGMPGDVPVTPGSTSLADYMSGLY
CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GAIGVLLALRHRDATGEGQVIDLALYESVFRALDEIAPAFAMFGKVREREGAGTVNACPH
HHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GHFRCGDGKWVALACTTDRMFARLAEAMERPELADGAKWGLLRNRLAERADVDALVGHWA
CCEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATRPRETVMELCLDFEVPAAPLNTIADIFEDPQFQARGNLLEVADAVLGGVVVPGVVPKL
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCHHCCCCCCC
SATPGRVDHLGPRLGEDNARVYGGLLGLGEAEIAELKSKGVI
CCCCCCHHHCCCCCCCCCCEEHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AHPKRPLDGIRVLDIATFIAAPYAAAILGEFGAEVIKVEQPGGGDTFRRFGSITERDGD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCC
SLMWLSEARNKNSVTLDLRKPEGRELFLKLVARTDVIAENFRPGTLEKWGLGWEELRRVN
CEEEEHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCC
PGLILLRISGYGQTGPYKDRPGFARIAHAFGGLSYLAGMPGDVPVTPGSTSLADYMSGLY
CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GAIGVLLALRHRDATGEGQVIDLALYESVFRALDEIAPAFAMFGKVREREGAGTVNACPH
HHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GHFRCGDGKWVALACTTDRMFARLAEAMERPELADGAKWGLLRNRLAERADVDALVGHWA
CCEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATRPRETVMELCLDFEVPAAPLNTIADIFEDPQFQARGNLLEVADAVLGGVVVPGVVPKL
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCHHCCCCCCC
SATPGRVDHLGPRLGEDNARVYGGLLGLGEAEIAELKSKGVI
CCCCCCHHHCCCCCCCCCCEEHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]