Click here to switch to the map view.

The map label for this gene is yfhQ [C]

Identifier: 83311228

GI number: 83311228

Start: 2302956

End: 2303723

Strand: Reverse

Name: yfhQ [C]

Synonym: amb2129

Alternate gene names: 83311228

Gene position: 2303723-2302956 (Counterclockwise)

Preceding gene: 83311229

Following gene: 83311227

Centisome position: 46.38

GC content: 66.93

Gene sequence:

>768_bases
ATGACAGTCTCCGCCACATCCCGCCCAGGTCCCGCCATCATCCTGGTCCGGCCGCAACTGTCCGAGAATATCGGGACCGC
GGCCCGGGCCATGCTCAATTGCGGCCTGACCGACATGCGCATCGTGGCGCCGCGGGAAGGCTGGCTGAGCGAAAAGGCCA
TCGCCGCCGCCTCGGGCGCCGATCGCCTCCTGCTGTCGGCCAAGGTCTTCGAGCAGACCAAGGACGCCGTGGCCGACCTC
AACCGGGTCTGGGCCACCACGGGCCGCGACCGCTACATGACCAAGCCGGTGGATACCCCCCGCGAGGCCGCCGCCCATAT
GCGCGCCGCCCATGCCGAGGGCCAGACCTTCGGCGTGCTGTTCGGCCCCGAGCGCACCGGGCTGGAGAACGACGACGTGG
CGGTGGCCGACACCGTGCTGACCGTGCCGCTCAATCCCGAATACTGCTCGCTGAACCTGGCCCAGGCGGTGCTGCTGGTC
TCCTACGAATGGCACCAGTGCGAAGCCGCCGAGACCCTGCCGCCCATGACCAAGGGAGCAGAAGGCCCGGCCACCAAGGA
GAAGCTGATTTTCTTCTTCGAGCATCTGGAGCGCGAACTGGATGCCTGCGGCTTCCTCCGCGTCCCCGACAAGCGCCCGG
TGATGGTCAGAAACATCCGCAACATGTTCCAGCGCGCCAACCTCACCGGCCAGGAAATCCAGACCCTGCACGGCATCGTC
CACGAACTGGTGACCTATCGCCACCAGAAGGGAGAGGGGAAGGCTTGA

Upstream 100 bases:

>100_bases
GTATGCGCCCTCGCCGGGCGCTCGCATCCGCTCGCTTGGCCGCCGCCTCAATGGCGGCTGGATGCCCGCGAACGGTTCAC
ATAAAGGGTTCGCAGTCATC

Downstream 100 bases:

>100_bases
ATCTGTTGACACAGCCGGCCTGATCCGTATATTTCGCCCCTTCTCCTCCCGAGAAAGCGGGTGGCCGGCCGTTTGGCGCG
CCCACCCCTCCCCGCCCGCC

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTVSATSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLLSAKVFEQTKDAVADL
NRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLV
SYEWHQCEAAETLPPMTKGAEGPATKEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIV
HELVTYRHQKGEGKA

Sequences:

>Translated_255_residues
MTVSATSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLLSAKVFEQTKDAVADL
NRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLV
SYEWHQCEAAETLPPMTKGAEGPATKEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIV
HELVTYRHQKGEGKA
>Mature_254_residues
TVSATSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLLSAKVFEQTKDAVADLN
RVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVS
YEWHQCEAAETLPPMTKGAEGPATKEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVH
ELVTYRHQKGEGKA

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=240, Percent_Identity=34.1666666666667, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790865, Length=151, Percent_Identity=35.7615894039735, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28059; Mature: 27928

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSATSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGA
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCC
DRLLLSAKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEE
FGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGA
ECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCHHHCCCCCCCCC
EGPATKEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIV
CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HELVTYRHQKGEGKA
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVSATSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGA
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCC
DRLLLSAKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEE
FGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGA
ECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCHHHCCCCCCCCC
EGPATKEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIV
CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HELVTYRHQKGEGKA
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]