Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 83310768

GI number: 83310768

Start: 1807194

End: 1808876

Strand: Reverse

Name: yciR [C]

Synonym: amb1669

Alternate gene names: 83310768

Gene position: 1808876-1807194 (Counterclockwise)

Preceding gene: 83310774

Following gene: 83310767

Centisome position: 36.42

GC content: 63.99

Gene sequence:

>1683_bases
ATGGGTAGCGGGGATGCATCGCTTGTTGAAAAACTGAAGCTGCAGCGGGACCGGTTCATCGCTTTTGCGTTTGCCGGCGC
CGATCTGCTGTTGGAGATGAACGACGAGGACGTCGTCACCTATTCCGCCGGCGCGGGCGAAGCCCTGTACGGCATCTCGG
ATTCCGAGCTGCTGGGGCGGCCGCTGGCCGAGTTCATCTTCCAGCGCGACAAGGACAAGTTCACCGACGCGATCCAGCGG
CTGCGCAATTCCGGGCGGCTGGATCACACGCCGCTGTCAATGGTCGGGGCTTCGGGCGCCGTGTCGCGCATGCGCATGGC
GGGCATCAAGCTGCCCCAGTTCCCCACCGGCTATCATCTGGTGCTGTCGCGCATCTCGCCCCTGGCCACCAGCGAGAACG
ACCAGTCGGGCCAGACCGCCGACCCCCGGGTGCGCTTCGTCGACATGGTGCGCCAGCGCCTGAATGAGGCCAACCGCCTG
GGCGAGGACTACACCTTAACCATGTTCGACCTGTCGGCCTCGAAGTTCGGCGGCACCGAGCCGGCGCTGCTGCAAAGCTT
CTTTTCCACGCTCCATCACGCCCTGGAAGGATGCTCGGTCCGCCAGTCCTCGGCCGGCGCCCTCAACGAGCGGGCCTTCG
GCCTGGTGCACGACCAGACAGTCAGTTCCGGCGATGTGCAGGAAAAGGTCAACGAGGTGTTCCGCCAGTTCAGCGGCAAG
GTCAAGGGCGCCTCCCTGAAGATGCACAGCGCCTCGCTGGAGATGGACGATTCCGCCATGTCCGAAGACGATCTCGGCAA
GGCGTTGAACTTCATCATCAACGGCTTCGTCAGAGACAGCGCCAAGTTTGCCATCAAATCCCTGGCCGAGGGCGCCAAGG
TGGCGGTGGAAGACACTCTGGTGCGAGTGCGCAATTTCCGCAAGATGATCCGCGGCGACAAGCTGGCCTTCTTCTTCCAG
CCCATGGTGAACGTCAGCACCGGCACCGTGCTGGCCTACGAGGCCTTCGGCCGCATCGCCCACGACAAGGGCTTCTTCGC
GCCGTCGCAGATCATTCCCTTCGCCACCGACGTGGGCGTCATCGGCGAGTTCGACCTGATGGCGGTGAGAAAGGCCCTGG
CGGCCATGAAGGCCGCCTCGGACATTTCGGCGCTGGCCAGCATCGCCGTCAACGTCTCGGGCACCTCACTGGGCAACCCC
GCCTTCTATCACTCCCTGGTCAAGATCCTGGAGGAGAACAAGCCGGTCCTCGCTCGTCTGGTCCTCGAGATCACCGACGC
GGCCCGCATCTACAATCTGGACGAAGCGCGGCGCCTGCTGGCCCGCATTAAGCGCCTGGGCGTGCGCCTGTCGCTGGACG
ATTTCGGCTCGGGCGGCGCCGCCTTCGACATCTTGAAGATCCTGCCCGCCGATTACGTCAAGATCGATCGCGACTACATT
TTCGACGCGCGGGAAAAGCGCGGCCGCTCGGTGCTGCGCGCCATGGTCAGCCTCACCCATGACCTGGGCATGACCGCCAT
CGGCGAGTGTATCGAGGACAGCCAGATGCTGGCCGTCCTCAAGGACGTGGGCATCGAATACGCCCAGGGCCATTTCTTCT
CGCCCCCGGCCTTGGATGCGGCGCGCAAGATCAAGTACTACAAGGACCATCTCAAGGTCGCCGAACCCTCGGCCGCCGAA
TAG

Upstream 100 bases:

>100_bases
CCGGATATCCGTAATCGCCTTGAAACGATATGTAGCTTTTTGTAACTTACTTGTGGGGGATTAGTACCGTGGATCACCAG
TCTTTGGAGGTCGGGAGCCC

Downstream 100 bases:

>100_bases
CCCCGCCTTTCGCCGCCCAGCCCTGACGCCCAAGCAGCCCGGCAATGCCGCCAAGGGACTGGACCCCGCCCGGTGATCTG
GTATTTTCCCTGACAGGCCG

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MGSGDASLVEKLKLQRDRFIAFAFAGADLLLEMNDEDVVTYSAGAGEALYGISDSELLGRPLAEFIFQRDKDKFTDAIQR
LRNSGRLDHTPLSMVGASGAVSRMRMAGIKLPQFPTGYHLVLSRISPLATSENDQSGQTADPRVRFVDMVRQRLNEANRL
GEDYTLTMFDLSASKFGGTEPALLQSFFSTLHHALEGCSVRQSSAGALNERAFGLVHDQTVSSGDVQEKVNEVFRQFSGK
VKGASLKMHSASLEMDDSAMSEDDLGKALNFIINGFVRDSAKFAIKSLAEGAKVAVEDTLVRVRNFRKMIRGDKLAFFFQ
PMVNVSTGTVLAYEAFGRIAHDKGFFAPSQIIPFATDVGVIGEFDLMAVRKALAAMKAASDISALASIAVNVSGTSLGNP
AFYHSLVKILEENKPVLARLVLEITDAARIYNLDEARRLLARIKRLGVRLSLDDFGSGGAAFDILKILPADYVKIDRDYI
FDAREKRGRSVLRAMVSLTHDLGMTAIGECIEDSQMLAVLKDVGIEYAQGHFFSPPALDAARKIKYYKDHLKVAEPSAAE

Sequences:

>Translated_560_residues
MGSGDASLVEKLKLQRDRFIAFAFAGADLLLEMNDEDVVTYSAGAGEALYGISDSELLGRPLAEFIFQRDKDKFTDAIQR
LRNSGRLDHTPLSMVGASGAVSRMRMAGIKLPQFPTGYHLVLSRISPLATSENDQSGQTADPRVRFVDMVRQRLNEANRL
GEDYTLTMFDLSASKFGGTEPALLQSFFSTLHHALEGCSVRQSSAGALNERAFGLVHDQTVSSGDVQEKVNEVFRQFSGK
VKGASLKMHSASLEMDDSAMSEDDLGKALNFIINGFVRDSAKFAIKSLAEGAKVAVEDTLVRVRNFRKMIRGDKLAFFFQ
PMVNVSTGTVLAYEAFGRIAHDKGFFAPSQIIPFATDVGVIGEFDLMAVRKALAAMKAASDISALASIAVNVSGTSLGNP
AFYHSLVKILEENKPVLARLVLEITDAARIYNLDEARRLLARIKRLGVRLSLDDFGSGGAAFDILKILPADYVKIDRDYI
FDAREKRGRSVLRAMVSLTHDLGMTAIGECIEDSQMLAVLKDVGIEYAQGHFFSPPALDAARKIKYYKDHLKVAEPSAAE
>Mature_559_residues
GSGDASLVEKLKLQRDRFIAFAFAGADLLLEMNDEDVVTYSAGAGEALYGISDSELLGRPLAEFIFQRDKDKFTDAIQRL
RNSGRLDHTPLSMVGASGAVSRMRMAGIKLPQFPTGYHLVLSRISPLATSENDQSGQTADPRVRFVDMVRQRLNEANRLG
EDYTLTMFDLSASKFGGTEPALLQSFFSTLHHALEGCSVRQSSAGALNERAFGLVHDQTVSSGDVQEKVNEVFRQFSGKV
KGASLKMHSASLEMDDSAMSEDDLGKALNFIINGFVRDSAKFAIKSLAEGAKVAVEDTLVRVRNFRKMIRGDKLAFFFQP
MVNVSTGTVLAYEAFGRIAHDKGFFAPSQIIPFATDVGVIGEFDLMAVRKALAAMKAASDISALASIAVNVSGTSLGNPA
FYHSLVKILEENKPVLARLVLEITDAARIYNLDEARRLLARIKRLGVRLSLDDFGSGGAAFDILKILPADYVKIDRDYIF
DAREKRGRSVLRAMVSLTHDLGMTAIGECIEDSQMLAVLKDVGIEYAQGHFFSPPALDAARKIKYYKDHLKVAEPSAAE

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=255, Percent_Identity=27.843137254902, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=26.4227642276423, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081921, Length=285, Percent_Identity=24.5614035087719, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1786507, Length=230, Percent_Identity=25.2173913043478, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=27.6150627615063, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=22.2689075630252, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI226510982, Length=231, Percent_Identity=25.974025974026, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=23.4567901234568, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87082096, Length=204, Percent_Identity=23.0392156862745, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788849, Length=191, Percent_Identity=24.0837696335079, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=27.2, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=22.0720720720721, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 61220; Mature: 61089

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50112 PAS ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSGDASLVEKLKLQRDRFIAFAFAGADLLLEMNDEDVVTYSAGAGEALYGISDSELLGR
CCCCHHHHHHHHHHHHHHEEEEEEECCEEEEEECCCCEEEEECCCCCEEECCCCHHHHHH
PLAEFIFQRDKDKFTDAIQRLRNSGRLDHTPLSMVGASGAVSRMRMAGIKLPQFPTGYHL
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCHHHH
VLSRISPLATSENDQSGQTADPRVRFVDMVRQRLNEANRLGEDYTLTMFDLSASKFGGTE
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCC
PALLQSFFSTLHHALEGCSVRQSSAGALNERAFGLVHDQTVSSGDVQEKVNEVFRQFSGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCEEEECCCCCCCCHHHHHHHHHHHHCCC
VKGASLKMHSASLEMDDSAMSEDDLGKALNFIINGFVRDSAKFAIKSLAEGAKVAVEDTL
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VRVRNFRKMIRGDKLAFFFQPMVNVSTGTVLAYEAFGRIAHDKGFFAPSQIIPFATDVGV
HHHHHHHHHHCCCCEEEEEHHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCC
IGEFDLMAVRKALAAMKAASDISALASIAVNVSGTSLGNPAFYHSLVKILEENKPVLARL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
VLEITDAARIYNLDEARRLLARIKRLGVRLSLDDFGSGGAAFDILKILPADYVKIDRDYI
HHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHCCHHHEEECHHHH
FDAREKRGRSVLRAMVSLTHDLGMTAIGECIEDSQMLAVLKDVGIEYAQGHFFSPPALDA
HCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHH
ARKIKYYKDHLKVAEPSAAE
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GSGDASLVEKLKLQRDRFIAFAFAGADLLLEMNDEDVVTYSAGAGEALYGISDSELLGR
CCCHHHHHHHHHHHHHHEEEEEEECCEEEEEECCCCEEEEECCCCCEEECCCCHHHHHH
PLAEFIFQRDKDKFTDAIQRLRNSGRLDHTPLSMVGASGAVSRMRMAGIKLPQFPTGYHL
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCHHHH
VLSRISPLATSENDQSGQTADPRVRFVDMVRQRLNEANRLGEDYTLTMFDLSASKFGGTE
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCC
PALLQSFFSTLHHALEGCSVRQSSAGALNERAFGLVHDQTVSSGDVQEKVNEVFRQFSGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCEEEECCCCCCCCHHHHHHHHHHHHCCC
VKGASLKMHSASLEMDDSAMSEDDLGKALNFIINGFVRDSAKFAIKSLAEGAKVAVEDTL
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VRVRNFRKMIRGDKLAFFFQPMVNVSTGTVLAYEAFGRIAHDKGFFAPSQIIPFATDVGV
HHHHHHHHHHCCCCEEEEEHHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCC
IGEFDLMAVRKALAAMKAASDISALASIAVNVSGTSLGNPAFYHSLVKILEENKPVLARL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
VLEITDAARIYNLDEARRLLARIKRLGVRLSLDDFGSGGAAFDILKILPADYVKIDRDYI
HHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHCCHHHEEECHHHH
FDAREKRGRSVLRAMVSLTHDLGMTAIGECIEDSQMLAVLKDVGIEYAQGHFFSPPALDA
HCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHH
ARKIKYYKDHLKVAEPSAAE
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]