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The map label for this gene is nirS [H]

Identifier: 83310494

GI number: 83310494

Start: 1520017

End: 1521639

Strand: Reverse

Name: nirS [H]

Synonym: amb1395

Alternate gene names: 83310494

Gene position: 1521639-1520017 (Counterclockwise)

Preceding gene: 83310495

Following gene: 83310493

Centisome position: 30.63

GC content: 60.81

Gene sequence:

>1623_bases
ATGTGGAAGGGAGTTCGGAACGCATTGTTGCTGACGGCGCTGCCGTTCGCGATGAGTGGGGCTGCGTTCGCCCAGGAAGC
GACTTTGAGCAAGGAAGCCAAGGAAGCTAGTGCCAAGATCTATTTCGAGCGCTGCGCCGGCTGCCATGGCGTGCTGCGCA
AGGGTGCCACCGGCAAGAATCTCGAGCCGGCCAACACCACCAAGCTGGGCCAAGCCCGCCTCGAGAAGATTCTGACCAAT
GGCACCGATGGCGGCATGGTGAACTTCGATGACATCCTGACCAAGGATGAAATCAAGAACATGGCCACCTACATCCAGAT
GACCCCCGACGTTCCGCCGGAATGGGGCATCAAGGAAATGACTGCCTCCTGGAAGGTCACGGTGAAGCCGGAAGACCGTC
CGAAGAAGCAGATGAACAAGGTCAACCTGAAGAACGTCTTCTCGGTGACCCTGCGCGATACGGGCGAGATCGCCCTGATC
GACGGCGATACCAAGAAGATCTGGACCATCATCAAGACCGGCTACGCCGTGCACATCTCGCGCCTGTCGGCGTCGGGCCG
CTTCGTGTACGTCATCGGCCGCGACGGCAAGCTGGACATGATCGACCTGTGGATGGAGACCCCCGCCGTGGTGGCCACCA
TCAAGATCGGCATGGATGCCCGTTCGGTGGAAACCTCCAAGTTCAAGGGCTTCGAGGACAAGTACGCCGTGGCCGGCTCC
TACTGGCCGCCCCAGTACGTGATCATGGACGGCGCCGACCTCAAGCCGCTCAAGATCGTCTCCACCCGCGGCATCACCGT
GGATGGCGAATATCACCCCGAGCCCCGCGTGGCCTCGATCGTCGCGTCGATGATCAAGCCCGAATGGGTCATCAACATCA
AGGAAACCGGCCTGATCAAGCTGGTGGATTACTCCGACATCAAGAACCTGAAGGAGACCACCATCGAGTCGGCTAAGTTC
CTCCACGACGGTGGCTGGGACGCGTCCAAGCGCTACTTCCTGGTGGCCGCCAACGCCTCCAACAAGGTGGCCGTGGTCGA
CACCAAGGACGGCAAGCTGGCCGGTCTGGTCGACACCAAGTCCAAGCCCCATCCGGGCCGCGGCGCCAACTTCAACCATC
CGAAGTTCGGTCCCGTGTGGGCCACCTCGCACCTGGGCGCCGACGTGATCACCCTGATCGGCACAGATCCGGCCAAGCAT
AAGGATCAGGCCTGGAAGGTCGTCGCCGAACTGAAGAACCACGGTGCGGGTTCGCTGTTCGTCAAGACCCATCCCAAGTC
CAACAACCTGTGGGCCGACGCTCCGCTGTTCCCCGAAAAGGACATGGCCGAGTCCGTCACCGTCTACGACATCAAGAACC
TGGACAAGGGCCCCGAGGTGATCAACATCGCCAAGCTGGCCGACCTGCCGGAAACCAAGGCGGTCAAGCGCGCGGTGCAG
GCCGAGTACAACGAGAAGGGCGATGAAGTCTGGTTCTCGATCTGGGCCGGCAAGACCGATCCGTCGGCGATCGTGGTCAT
GGACGACAAGACCCGCAAGGTGAAGGCCGTGATCAAGGATCCGAAGCTGATCACCCCCACCGGCAAGTTCAACGTGTACA
ACACGCAGCACGATATCTACTAA

Upstream 100 bases:

>100_bases
AGGGGCGACAAGGCACACTGTGCCCGGACCTTAATGCTTTGGCCGCCGCCCAATGGGCCTTCCGGCCACGGTTTAGTTTG
ACGTAAGGGAGGGTTGCCGT

Downstream 100 bases:

>100_bases
GACTCTGATAGCTCCACCCTACGCCCCCCGGGAATCGCAAGGTTCCCGGGGTTTTTTTGTCCTTCCGCCCCGGCCCGTCC
GGCGGGATCGGCATCTTCGG

Product: nitrite reductase precursor

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MWKGVRNALLLTALPFAMSGAAFAQEATLSKEAKEASAKIYFERCAGCHGVLRKGATGKNLEPANTTKLGQARLEKILTN
GTDGGMVNFDDILTKDEIKNMATYIQMTPDVPPEWGIKEMTASWKVTVKPEDRPKKQMNKVNLKNVFSVTLRDTGEIALI
DGDTKKIWTIIKTGYAVHISRLSASGRFVYVIGRDGKLDMIDLWMETPAVVATIKIGMDARSVETSKFKGFEDKYAVAGS
YWPPQYVIMDGADLKPLKIVSTRGITVDGEYHPEPRVASIVASMIKPEWVINIKETGLIKLVDYSDIKNLKETTIESAKF
LHDGGWDASKRYFLVAANASNKVAVVDTKDGKLAGLVDTKSKPHPGRGANFNHPKFGPVWATSHLGADVITLIGTDPAKH
KDQAWKVVAELKNHGAGSLFVKTHPKSNNLWADAPLFPEKDMAESVTVYDIKNLDKGPEVINIAKLADLPETKAVKRAVQ
AEYNEKGDEVWFSIWAGKTDPSAIVVMDDKTRKVKAVIKDPKLITPTGKFNVYNTQHDIY

Sequences:

>Translated_540_residues
MWKGVRNALLLTALPFAMSGAAFAQEATLSKEAKEASAKIYFERCAGCHGVLRKGATGKNLEPANTTKLGQARLEKILTN
GTDGGMVNFDDILTKDEIKNMATYIQMTPDVPPEWGIKEMTASWKVTVKPEDRPKKQMNKVNLKNVFSVTLRDTGEIALI
DGDTKKIWTIIKTGYAVHISRLSASGRFVYVIGRDGKLDMIDLWMETPAVVATIKIGMDARSVETSKFKGFEDKYAVAGS
YWPPQYVIMDGADLKPLKIVSTRGITVDGEYHPEPRVASIVASMIKPEWVINIKETGLIKLVDYSDIKNLKETTIESAKF
LHDGGWDASKRYFLVAANASNKVAVVDTKDGKLAGLVDTKSKPHPGRGANFNHPKFGPVWATSHLGADVITLIGTDPAKH
KDQAWKVVAELKNHGAGSLFVKTHPKSNNLWADAPLFPEKDMAESVTVYDIKNLDKGPEVINIAKLADLPETKAVKRAVQ
AEYNEKGDEVWFSIWAGKTDPSAIVVMDDKTRKVKAVIKDPKLITPTGKFNVYNTQHDIY
>Mature_540_residues
MWKGVRNALLLTALPFAMSGAAFAQEATLSKEAKEASAKIYFERCAGCHGVLRKGATGKNLEPANTTKLGQARLEKILTN
GTDGGMVNFDDILTKDEIKNMATYIQMTPDVPPEWGIKEMTASWKVTVKPEDRPKKQMNKVNLKNVFSVTLRDTGEIALI
DGDTKKIWTIIKTGYAVHISRLSASGRFVYVIGRDGKLDMIDLWMETPAVVATIKIGMDARSVETSKFKGFEDKYAVAGS
YWPPQYVIMDGADLKPLKIVSTRGITVDGEYHPEPRVASIVASMIKPEWVINIKETGLIKLVDYSDIKNLKETTIESAKF
LHDGGWDASKRYFLVAANASNKVAVVDTKDGKLAGLVDTKSKPHPGRGANFNHPKFGPVWATSHLGADVITLIGTDPAKH
KDQAWKVVAELKNHGAGSLFVKTHPKSNNLWADAPLFPEKDMAESVTVYDIKNLDKGPEVINIAKLADLPETKAVKRAVQ
AEYNEKGDEVWFSIWAGKTDPSAIVVMDDKTRKVKAVIKDPKLITPTGKFNVYNTQHDIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 59529; Mature: 59529

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKGVRNALLLTALPFAMSGAAFAQEATLSKEAKEASAKIYFERCAGCHGVLRKGATGKN
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
LEPANTTKLGQARLEKILTNGTDGGMVNFDDILTKDEIKNMATYIQMTPDVPPEWGIKEM
CCCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHCHHHHHHHEEEEEECCCCCCCCCHHHC
TASWKVTVKPEDRPKKQMNKVNLKNVFSVTLRDTGEIALIDGDTKKIWTIIKTGYAVHIS
CCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCEEEEEE
RLSASGRFVYVIGRDGKLDMIDLWMETPAVVATIKIGMDARSVETSKFKGFEDKYAVAGS
EECCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHCCCCCCCEEEECC
YWPPQYVIMDGADLKPLKIVSTRGITVDGEYHPEPRVASIVASMIKPEWVINIKETGLIK
CCCCEEEEECCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEE
LVDYSDIKNLKETTIESAKFLHDGGWDASKRYFLVAANASNKVAVVDTKDGKLAGLVDTK
EEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC
SKPHPGRGANFNHPKFGPVWATSHLGADVITLIGTDPAKHKDQAWKVVAELKNHGAGSLF
CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
VKTHPKSNNLWADAPLFPEKDMAESVTVYDIKNLDKGPEVINIAKLADLPETKAVKRAVQ
EEECCCCCCEEECCCCCCCCHHHCCEEEEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHH
AEYNEKGDEVWFSIWAGKTDPSAIVVMDDKTRKVKAVIKDPKLITPTGKFNVYNTQHDIY
HHCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEECCCCCEEEECCCCCCC
>Mature Secondary Structure
MWKGVRNALLLTALPFAMSGAAFAQEATLSKEAKEASAKIYFERCAGCHGVLRKGATGKN
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
LEPANTTKLGQARLEKILTNGTDGGMVNFDDILTKDEIKNMATYIQMTPDVPPEWGIKEM
CCCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHCHHHHHHHEEEEEECCCCCCCCCHHHC
TASWKVTVKPEDRPKKQMNKVNLKNVFSVTLRDTGEIALIDGDTKKIWTIIKTGYAVHIS
CCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCEEEEEE
RLSASGRFVYVIGRDGKLDMIDLWMETPAVVATIKIGMDARSVETSKFKGFEDKYAVAGS
EECCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHCCCCCCCEEEECC
YWPPQYVIMDGADLKPLKIVSTRGITVDGEYHPEPRVASIVASMIKPEWVINIKETGLIK
CCCCEEEEECCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEE
LVDYSDIKNLKETTIESAKFLHDGGWDASKRYFLVAANASNKVAVVDTKDGKLAGLVDTK
EEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC
SKPHPGRGANFNHPKFGPVWATSHLGADVITLIGTDPAKHKDQAWKVVAELKNHGAGSLF
CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
VKTHPKSNNLWADAPLFPEKDMAESVTVYDIKNLDKGPEVINIAKLADLPETKAVKRAVQ
EEECCCCCCEEECCCCCCCCHHHCCEEEEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHH
AEYNEKGDEVWFSIWAGKTDPSAIVVMDDKTRKVKAVIKDPKLITPTGKFNVYNTQHDIY
HHCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2001732 [H]