Click here to switch to the map view.

The map label for this gene is rfbD [H]

Identifier: 83310170

GI number: 83310170

Start: 1133997

End: 1134938

Strand: Reverse

Name: rfbD [H]

Synonym: amb1071

Alternate gene names: 83310170

Gene position: 1134938-1133997 (Counterclockwise)

Preceding gene: 83310187

Following gene: 83310169

Centisome position: 22.85

GC content: 62.74

Gene sequence:

>942_bases
GTGCGCCCCATCACCGATTGGCCGTCAGACTCGCCGCATGCCCGGCTCCTCCGCCGGACCGAGCCACGGCGTGCCGCGTA
TGGCGCGGCCATGACTTCCGAGAGCAACAGATTCGGACGCAGGAAACCTTGTCTCCGGCGCCCGCCCCAAACGAGTTTGA
TCGGCTGCCAAGTGTCCTCCATCGCCACCTACCGTGTATGGCCTCTCGCCTTGCTTCTCTGCCGCCTCAGTCTGGCCCGC
GCCTTCAGGCAGTCGGGCCTGGGGCCGCTGTGGAACTCCATTGGCGTCGCCGTGGCCGTGGCCGCCGTGGGGACGCTGTT
CGGCACGATCTTGCGGCGGCAATTGGTAAGTTTCGATACCTATGTGGACTCGCTGGCCGCCGGCCTGGTCATCTGGTCGT
TCCTATCGGCAGTCGTCGGCGAGAACTCCATCGCCTTTGCCCGTTGGATGCCCATTTTGCGCCACTCCAACATTTCGCTG
TCGGTAATCACCCTGTCCGTGTTCTTGCATCATCTGCCGGTTCTCGCCCTCAATCTGGGGCTATTCCTGCTGCTGCAGTA
TCTCTTCCTCGGCTTTACGCCAACCATCCTGCCGCTGGCGGCATCGCTGTTGCTCCTGCTCGTGAACGTGGCGTGGATGG
GGGCCGCCGCGATGGTTTTGGGCGCGAGATTTCGCGATGTCGGTCAGCTGATAGCCAATCTGCTGCAGATCACCTTCCTG
TTGACCCCAATCTTGTGGCCCCCCTACTTCTTGGGGCGGTTTGAATACCTGCTGCTGCTCAACCCCTTCCATCATTTGCT
GTCCACCGTCGGCGCCGCCGCCATCGGCAATGTGGCCCCCGCCGTCAATTGGTGGGTCAGTCTTGCCATGGCCCTCACCG
GGGGATTAGCCTCGGTCGGACTATACCGCTGGTCACGTCCCCGCTGGCCATACTGGATCTGA

Upstream 100 bases:

>100_bases
CGCAAATTCGTGATCCCCCCCCACTTCCGCCTTCCGAAAAGCCCCCTCCTCAGCGGGATTGACGCTCCCGATTCACAGGA
GTATTGGGTGGGGGTCGCTG

Downstream 100 bases:

>100_bases
TGATGGCCAGGCTTGAACTGCAGGACGTGACCGTCACCTATCGGCTCTACGATGCCGAGGGCCGCTCGTTCACCAGATCA
CTGCTGAAGGGAGCCGGTGG

Product: ABC-type polysaccharide/polyol phosphate export systems

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRPITDWPSDSPHARLLRRTEPRRAAYGAAMTSESNRFGRRKPCLRRPPQTSLIGCQVSSIATYRVWPLALLLCRLSLAR
AFRQSGLGPLWNSIGVAVAVAAVGTLFGTILRRQLVSFDTYVDSLAAGLVIWSFLSAVVGENSIAFARWMPILRHSNISL
SVITLSVFLHHLPVLALNLGLFLLLQYLFLGFTPTILPLAASLLLLLVNVAWMGAAAMVLGARFRDVGQLIANLLQITFL
LTPILWPPYFLGRFEYLLLLNPFHHLLSTVGAAAIGNVAPAVNWWVSLAMALTGGLASVGLYRWSRPRWPYWI

Sequences:

>Translated_313_residues
MRPITDWPSDSPHARLLRRTEPRRAAYGAAMTSESNRFGRRKPCLRRPPQTSLIGCQVSSIATYRVWPLALLLCRLSLAR
AFRQSGLGPLWNSIGVAVAVAAVGTLFGTILRRQLVSFDTYVDSLAAGLVIWSFLSAVVGENSIAFARWMPILRHSNISL
SVITLSVFLHHLPVLALNLGLFLLLQYLFLGFTPTILPLAASLLLLLVNVAWMGAAAMVLGARFRDVGQLIANLLQITFL
LTPILWPPYFLGRFEYLLLLNPFHHLLSTVGAAAIGNVAPAVNWWVSLAMALTGGLASVGLYRWSRPRWPYWI
>Mature_313_residues
MRPITDWPSDSPHARLLRRTEPRRAAYGAAMTSESNRFGRRKPCLRRPPQTSLIGCQVSSIATYRVWPLALLLCRLSLAR
AFRQSGLGPLWNSIGVAVAVAAVGTLFGTILRRQLVSFDTYVDSLAAGLVIWSFLSAVVGENSIAFARWMPILRHSNISL
SVITLSVFLHHLPVLALNLGLFLLLQYLFLGFTPTILPLAASLLLLLVNVAWMGAAAMVLGARFRDVGQLIANLLQITFL
LTPILWPPYFLGRFEYLLLLNPFHHLLSTVGAAAIGNVAPAVNWWVSLAMALTGGLASVGLYRWSRPRWPYWI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 34624; Mature: 34624

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPITDWPSDSPHARLLRRTEPRRAAYGAAMTSESNRFGRRKPCLRRPPQTSLIGCQVSS
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHH
IATYRVWPLALLLCRLSLARAFRQSGLGPLWNSIGVAVAVAAVGTLFGTILRRQLVSFDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVDSLAAGLVIWSFLSAVVGENSIAFARWMPILRHSNISLSVITLSVFLHHLPVLALNLG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLLLQYLFLGFTPTILPLAASLLLLLVNVAWMGAAAMVLGARFRDVGQLIANLLQITFL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTPILWPPYFLGRFEYLLLLNPFHHLLSTVGAAAIGNVAPAVNWWVSLAMALTGGLASVG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYRWSRPRWPYWI
HHHCCCCCCCCCC
>Mature Secondary Structure
MRPITDWPSDSPHARLLRRTEPRRAAYGAAMTSESNRFGRRKPCLRRPPQTSLIGCQVSS
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHH
IATYRVWPLALLLCRLSLARAFRQSGLGPLWNSIGVAVAVAAVGTLFGTILRRQLVSFDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVDSLAAGLVIWSFLSAVVGENSIAFARWMPILRHSNISLSVITLSVFLHHLPVLALNLG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLLLQYLFLGFTPTILPLAASLLLLLVNVAWMGAAAMVLGARFRDVGQLIANLLQITFL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTPILWPPYFLGRFEYLLLLNPFHHLLSTVGAAAIGNVAPAVNWWVSLAMALTGGLASVG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYRWSRPRWPYWI
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]