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The map label for this gene is aer [H]

Identifier: 83310094

GI number: 83310094

Start: 1056444

End: 1056869

Strand: Reverse

Name: aer [H]

Synonym: amb0995

Alternate gene names: 83310094

Gene position: 1056869-1056444 (Counterclockwise)

Preceding gene: 83310097

Following gene: 83310093

Centisome position: 21.28

GC content: 53.52

Gene sequence:

>426_bases
TTGACAGTCAGCGGCTATGCCGAATCCGAGGTGATGGGGAAACCACATTCGGTCATACGGCACCCCGAAATGCCACGATG
CGTCTTCAAACTGCTTTGGGACACCATAGCCGATGGTCGGGAGATATTCGCCTATGTGAACAACATGGCGAAGAATGGTG
ACAACTACTGGGTATTCGCCCATGTCACCCCGAACTTCGACGCTGCCGGTCAGATCATCGGATATCACTCCAATCGACGG
GTGCCCGAGAAGGCCGCATTGGAGACGATCAAGCCGCTTTACTGTTCGCTGATGGAAGAAGAACGCCGCCATCCAGATTC
GAAGGTCGGGCTTGAGCGATCATGGAAAATGCTGAACGACGCCGTAGCAACGGCGGGATTCGATAGCTATGACCGTTTCA
TCTTCACCATCACGCCAGAAAATTGA

Upstream 100 bases:

>100_bases
TAAAACTCCATCAGGCCGTGAGCGAACTTTTGCTCATGACGAACTGATCGTCAGTAAGACCGATCCCAAAGGAAGGCTGA
CCTACGTCAACGACGTGTTT

Downstream 100 bases:

>100_bases
TCAGAGGCAGCCACATGGAAACGACCCTCGGCTCATATGCCCGAACCTTATCCCTTGGGATGCTGGTTCCTTCGGCGATC
TGCTTACTGGCGGGAACATT

Product: PAS/PAC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTVSGYAESEVMGKPHSVIRHPEMPRCVFKLLWDTIADGREIFAYVNNMAKNGDNYWVFAHVTPNFDAAGQIIGYHSNRR
VPEKAALETIKPLYCSLMEEERRHPDSKVGLERSWKMLNDAVATAGFDSYDRFIFTITPEN

Sequences:

>Translated_141_residues
MTVSGYAESEVMGKPHSVIRHPEMPRCVFKLLWDTIADGREIFAYVNNMAKNGDNYWVFAHVTPNFDAAGQIIGYHSNRR
VPEKAALETIKPLYCSLMEEERRHPDSKVGLERSWKMLNDAVATAGFDSYDRFIFTITPEN
>Mature_140_residues
TVSGYAESEVMGKPHSVIRHPEMPRCVFKLLWDTIADGREIFAYVNNMAKNGDNYWVFAHVTPNFDAAGQIIGYHSNRRV
PEKAALETIKPLYCSLMEEERRHPDSKVGLERSWKMLNDAVATAGFDSYDRFIFTITPEN

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=97, Percent_Identity=39.1752577319588, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 16129; Mature: 15998

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSGYAESEVMGKPHSVIRHPEMPRCVFKLLWDTIADGREIFAYVNNMAKNGDNYWVFA
CCCCCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEE
HVTPNFDAAGQIIGYHSNRRVPEKAALETIKPLYCSLMEEERRHPDSKVGLERSWKMLND
EECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AVATAGFDSYDRFIFTITPEN
HHHHCCCCCCCCEEEEECCCC
>Mature Secondary Structure 
TVSGYAESEVMGKPHSVIRHPEMPRCVFKLLWDTIADGREIFAYVNNMAKNGDNYWVFA
CCCCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEE
HVTPNFDAAGQIIGYHSNRRVPEKAALETIKPLYCSLMEEERRHPDSKVGLERSWKMLND
EECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AVATAGFDSYDRFIFTITPEN
HHHHCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]