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The map label for this gene is yebA [H]

Identifier: 83310001

GI number: 83310001

Start: 962681

End: 964069

Strand: Reverse

Name: yebA [H]

Synonym: amb0902

Alternate gene names: 83310001

Gene position: 964069-962681 (Counterclockwise)

Preceding gene: 83310004

Following gene: 83309999

Centisome position: 19.41

GC content: 66.74

Gene sequence:

>1389_bases
TTGGCCGCCCTCGTCACCGCCAAACTGCTGCGCAGCCTGAAGGCCCTGGCCATCGCCCTTGTGGTGGCGGGTGTGGCGGT
CATGGTCTCGCGCCCCTATGTGTCGTTCTCGCCTTTTGGGGAGGAGGGCGGCACGTTGGATTCCGCTCCCCCCTCTTATG
TGGATATGGAGAGCGAGGGCAGCGCCCAGCCCTCGCCCGAGCTGAGCGACGGCGAACTGGAAGACCGCTCCGGCCGACCG
GTGGACCATGTCCTGCAGGTCGGCTCGGGCGAGACGCTGGCCAGCCTTCTGGGTCGGGCGGGCATCCCTTCGGCCGACAC
CTCCCAGGTCATCGAGGCCCTGGTCAAGGTCTTCGACCCCCGCGACCTGAAAGCCGGGCAGAAGGTCACCGTCACCTTCG
ATCCGTCGCCCTGGGGCTTCGGCCAGGGCCCCTTCTCCCAGGTGGGGCTGGCCGCCGACCCGATCCGCGAGATCCAGGTG
CGGCGCAATCCCAAGGGCGGCTTCATCGGTCGCGAGGAAAGGCGCCAGGTCACCCGCCAGGTCGCCCACTTCTCGGGCAA
GATCAAGTCGAGCCTGTTCGAGAGCGCCACCGCCGCCGGCATCCCCGCCCAAGCGATCATCAACATGATCCGGGTGCTCA
GCTATGACGTCGACTTCCAGCGCGACATCCAGGCGGGCGACAGCTTCGAGGTGCTGTTCGACGGCTGGTACGACACCAAG
GGCAAGCTGGTGAAGAGTGGCGACATTCTCTATGCCGGCCTCGACCTGTCCGGGGCCGAGGTCACGCTTTACCGCTTCGA
GGACGGATCGGGCGCCTCGGACTTCTTCAACGGCAAGGGCGAGAGCGCCAAGAAGGCCCTGCTGAAGACCCCTGTGGACG
GCGCCAAGATCACCTCGGGCTTCGGGCTGCGCCACCACCCCATTCTCGGCTTTTCCAAGATGCACAAGGGCGTGGATTTC
GGCGTGCCCCCCGGCACCCCCATCATGGCGGCTGGCGACGGCTCGGTGGACATGGCCGGACCCAACGGCGCCTATGGCAA
TTATGTGCGCATTCGCCACGGCAACGGCTTTTCCACCGCCTATGCCCACATGCAGCGCATCGCCCAGGGCGTTCACACCG
GCCGGCGCATCATGCAAGGCCAGATCATCGGCTTTGTCGGCTCCACCGGCCGCTCCACCGGCCCGCACCTCCATTACGAG
GTGCTGCAGGGCAACAACCAGGTCAACCCGCTGTCCATCAAGGTGCCCACCGGGATCAAGCTGGCGGGGCGCGACATGGA
CCGCTATCAGGCGCACAAGCGCGCCACCGACCTGCTGATGGCCCAGATCCCCTCGGGCGCGCATGTGGCATCCAATCCGG
GCAAGCCGGTACAGGCCAAGGCGAACTGA

Upstream 100 bases:

>100_bases
TTGGAGCCCCCCTCTATAAGAAGGGGGGATTTGGGGTTGCCTTGGGGTGGAGGGGGCTGCCATAACCCAGCCAGACCTTA
TTATGGGATGAGCGACTTCC

Downstream 100 bases:

>100_bases
GGAATTTGGGCGGCCGCCCAAGCCCGCTCGGAGGAGAACCTCCGAACCTCCCTTTCTTTCACCGCCCTCAATCGGCGGGC
GGGCCTACACGCGAAGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MAALVTAKLLRSLKALAIALVVAGVAVMVSRPYVSFSPFGEEGGTLDSAPPSYVDMESEGSAQPSPELSDGELEDRSGRP
VDHVLQVGSGETLASLLGRAGIPSADTSQVIEALVKVFDPRDLKAGQKVTVTFDPSPWGFGQGPFSQVGLAADPIREIQV
RRNPKGGFIGREERRQVTRQVAHFSGKIKSSLFESATAAGIPAQAIINMIRVLSYDVDFQRDIQAGDSFEVLFDGWYDTK
GKLVKSGDILYAGLDLSGAEVTLYRFEDGSGASDFFNGKGESAKKALLKTPVDGAKITSGFGLRHHPILGFSKMHKGVDF
GVPPGTPIMAAGDGSVDMAGPNGAYGNYVRIRHGNGFSTAYAHMQRIAQGVHTGRRIMQGQIIGFVGSTGRSTGPHLHYE
VLQGNNQVNPLSIKVPTGIKLAGRDMDRYQAHKRATDLLMAQIPSGAHVASNPGKPVQAKAN

Sequences:

>Translated_462_residues
MAALVTAKLLRSLKALAIALVVAGVAVMVSRPYVSFSPFGEEGGTLDSAPPSYVDMESEGSAQPSPELSDGELEDRSGRP
VDHVLQVGSGETLASLLGRAGIPSADTSQVIEALVKVFDPRDLKAGQKVTVTFDPSPWGFGQGPFSQVGLAADPIREIQV
RRNPKGGFIGREERRQVTRQVAHFSGKIKSSLFESATAAGIPAQAIINMIRVLSYDVDFQRDIQAGDSFEVLFDGWYDTK
GKLVKSGDILYAGLDLSGAEVTLYRFEDGSGASDFFNGKGESAKKALLKTPVDGAKITSGFGLRHHPILGFSKMHKGVDF
GVPPGTPIMAAGDGSVDMAGPNGAYGNYVRIRHGNGFSTAYAHMQRIAQGVHTGRRIMQGQIIGFVGSTGRSTGPHLHYE
VLQGNNQVNPLSIKVPTGIKLAGRDMDRYQAHKRATDLLMAQIPSGAHVASNPGKPVQAKAN
>Mature_461_residues
AALVTAKLLRSLKALAIALVVAGVAVMVSRPYVSFSPFGEEGGTLDSAPPSYVDMESEGSAQPSPELSDGELEDRSGRPV
DHVLQVGSGETLASLLGRAGIPSADTSQVIEALVKVFDPRDLKAGQKVTVTFDPSPWGFGQGPFSQVGLAADPIREIQVR
RNPKGGFIGREERRQVTRQVAHFSGKIKSSLFESATAAGIPAQAIINMIRVLSYDVDFQRDIQAGDSFEVLFDGWYDTKG
KLVKSGDILYAGLDLSGAEVTLYRFEDGSGASDFFNGKGESAKKALLKTPVDGAKITSGFGLRHHPILGFSKMHKGVDFG
VPPGTPIMAAGDGSVDMAGPNGAYGNYVRIRHGNGFSTAYAHMQRIAQGVHTGRRIMQGQIIGFVGSTGRSTGPHLHYEV
LQGNNQVNPLSIKVPTGIKLAGRDMDRYQAHKRATDLLMAQIPSGAHVASNPGKPVQAKAN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=441, Percent_Identity=31.0657596371882, Blast_Score=171, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49051; Mature: 48920

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALVTAKLLRSLKALAIALVVAGVAVMVSRPYVSFSPFGEEGGTLDSAPPSYVDMESEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCC
SAQPSPELSDGELEDRSGRPVDHVLQVGSGETLASLLGRAGIPSADTSQVIEALVKVFDP
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
RDLKAGQKVTVTFDPSPWGFGQGPFSQVGLAADPIREIQVRRNPKGGFIGREERRQVTRQ
CCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHH
VAHFSGKIKSSLFESATAAGIPAQAIINMIRVLSYDVDFQRDIQAGDSFEVLFDGWYDTK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECEECCC
GKLVKSGDILYAGLDLSGAEVTLYRFEDGSGASDFFNGKGESAKKALLKTPVDGAKITSG
CCEEECCCEEEEECCCCCCEEEEEEECCCCCCCHHCCCCCCHHHHHHHHCCCCCCEECCC
FGLRHHPILGFSKMHKGVDFGVPPGTPIMAAGDGSVDMAGPNGAYGNYVRIRHGNGFSTA
CCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCEEEEEECCCHHHH
YAHMQRIAQGVHTGRRIMQGQIIGFVGSTGRSTGPHLHYEVLQGNNQVNPLSIKVPTGIK
HHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCCCE
LAGRDMDRYQAHKRATDLLMAQIPSGAHVASNPGKPVQAKAN
ECCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCC
>Mature Secondary Structure 
AALVTAKLLRSLKALAIALVVAGVAVMVSRPYVSFSPFGEEGGTLDSAPPSYVDMESEG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCC
SAQPSPELSDGELEDRSGRPVDHVLQVGSGETLASLLGRAGIPSADTSQVIEALVKVFDP
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
RDLKAGQKVTVTFDPSPWGFGQGPFSQVGLAADPIREIQVRRNPKGGFIGREERRQVTRQ
CCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHH
VAHFSGKIKSSLFESATAAGIPAQAIINMIRVLSYDVDFQRDIQAGDSFEVLFDGWYDTK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECEECCC
GKLVKSGDILYAGLDLSGAEVTLYRFEDGSGASDFFNGKGESAKKALLKTPVDGAKITSG
CCEEECCCEEEEECCCCCCEEEEEEECCCCCCCHHCCCCCCHHHHHHHHCCCCCCEECCC
FGLRHHPILGFSKMHKGVDFGVPPGTPIMAAGDGSVDMAGPNGAYGNYVRIRHGNGFSTA
CCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCEEEEEECCCHHHH
YAHMQRIAQGVHTGRRIMQGQIIGFVGSTGRSTGPHLHYEVLQGNNQVNPLSIKVPTGIK
HHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCCCE
LAGRDMDRYQAHKRATDLLMAQIPSGAHVASNPGKPVQAKAN
ECCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]