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The map label for this gene is cph1 [H]

Identifier: 83309922

GI number: 83309922

Start: 884155

End: 886542

Strand: Reverse

Name: cph1 [H]

Synonym: amb0823

Alternate gene names: 83309922

Gene position: 886542-884155 (Counterclockwise)

Preceding gene: 83309923

Following gene: 83309921

Centisome position: 17.85

GC content: 64.66

Gene sequence:

>2388_bases
GTGACTGCGGTGCTGCTGGTCGTGTGGATCAGTGGCATCCTTGTGGCTTGGCGCGATCGCAACAACTCGCTCAATGACAG
CGGCCGACTCACCGAAGCCCTGACCCGCGTGGTGGCCGAGCGCATCTCCGGCTCGCTGCGTGGCCTTGACCTGATGCTGC
AGGACGTGGACATCCACTCGCGGGAAAGGTCGGATCCTACAGAACTGCTGAACCTGATGCGCCACCGCAGCGCAGGCCTT
CCCGAGGTCCGCAACGTCTTCATCATCAATGCCGATGGAAAAGTCACCTCCTCGACGCTGCCATCCATGCTTGGCCTGGA
TCTGTCCCGCCGCCCCTATTTCATGACGGCGGCTCAGACCCCCATTCATGGCCATCTGATCATCACGCCCCCCTCGGTCA
GCCCGGTGACCGGCAAGCTTGGCTTGGTGGTGGCGCGGCCAATCACCAGTCCGGTGGGAACCTTCGCCGGATTGATCGCC
GTCGCGCTCAACCCGGAATTCTTTTCCGGGGCGCTGAGCGGCGTCGTGGAGGGCGACGTGGACCGGGCGGTGGTCGCCAA
CATGGACGGCAACGTCTTGGCGCGCCTTCCCGATCCGGGGCTCCATGTGGGCAGCTCCATCCGCTCGGGCCCGCTGTTTT
CCGACTATCTGCCCAAGGCCCGGGCCGGCACCTTCATCGCCCCCAGTTCGTTCGACGGCCAGGACCGGCTGGCCTCCTAT
CAGGCGCTGAACCACCAGCCCATCGTGGTCTCGGTAGGCATCACCACCCAGGCCGCGTTGCGACGCTGGACCGTCAACAC
GCTGGTCATGGCCGGAATCGGCCTGCTGTTCTCGACCGTCCTCCTGGGGGCGGCCCTGCAGCTGGAACGGCGCGAGCGCG
AGCGCCGCGGGGCCGAGACTGCCCTGAAGGCCAGCGAGGAGAGCTACCGCATCCTGGTCGACGACCAGGATGACCTGATC
CATCGCTATACCCAGGATACGACCCTGATCACCGTCAACCGGGCCTACGCCCGCTTTTACGGCCAGACCCCGGACAGCCT
GATCGGGCGGAAGTGGATCGAGTTCCTGCCGGACGAGGAACGCACCTTCTCCCTGTCCTGCCTGCAGGCCCTCAATCATA
TCCAGCCCTACCGCGAGGACCGCCGCCGGGTCGTCCGCCCCGACGGCCAGGAACTCTGGATCGAATGGCGGACTACGGCG
CTGTACGACGCCCTGGATAATCTGACCGGATACCAGACGGTGGGGCGTGACGTCACCGATTCCCACCGTGCCCAACAGGC
CATTTCGGAGCGCGAGGAGCTTTACAGCCAGAGCTTCCACCGCAATCCGGCCATCAAGCTGCTGATCGACCCTAAAAGCG
GCGCCATCACCGACGCCAATGATTCCGCGGCCCTGTTCTACGGCTATCCCGCCGATGTCCTGAAGCACATGAACATCCAG
GACATCAACGTGGCCTCGGCGGCGGAGATCGAGCACGAAATGGCGGCGGTGGAAAACGAGGGGCGCAAGTTCCTGCGCTT
CAGGCATCGCCTGTCATCGGGCGACATCCGCGATGTTGAGGTCTATTCGTCGCCCCTGCATGTGGGCGGCCGCGCCTATC
TCAGCAGCATCGTGGTCGACGTCTCCGACCGCAACCGCTTCGAGGCGGAGCTTCAGGCCAAGACCGCGGAACTGGCCCGC
TCCAACGCCGAGCTGGAACAGTTCGCCTATGTGGCCAGCCACGACCTGCGCCAGCCCCTGCGCATGGTCACCTCCTACGT
CACCCTGCTGGAGCGTCATCTGGGCGAGACCCTGGACGAGTCCAGCCGCGAATTCATCGGCTACACCATCTCCGGAGTGC
GGCGCATGGATGCGCTGATCAAGGGGCTGCTCGATTACTCGCGGGTGGGGCGCGGCGGCGAGACTCTCTCCGACCTGGAC
CTGGAGGAGGTGGTGGCCGATTCCTGCGCCAATCTCGGCCTGACCGGCAGCAGCGACGAGGCGACAGTCTTGGTGGAACA
CCCGCTGCCCAGGATTCTTGGGATTTCCAGCGAATTGATTCGCCTGTTCCAGAACCTGATCGGCAATGCGGTCAAGTACC
GCCATCCCGAACGCAAGCCGGAGATCCGCCTTTCCTCTCGCCGTCAGGGCAATGAATGGATCATCACCGTCGAAGACAAC
GGCCTGGGCATCGGCGCCGAACATTTCGAGCGTATCTTCGGGATGTTCCAGCGCCTGCACGCCGAAGGGGAGTTCGAGGG
AACCGGCATCGGACTGGCCATCTGTCGCAAAATCGTCACCACCCATGGCGGCCGCATCTGGGTGGAATCGGAGGAAGGCG
CCGGCTCGCGCTTCATGGTGGCCCTGCCGGCCTCACGAGCCGCCGCCCGAGGCCTCGCAACGCATTGA

Upstream 100 bases:

>100_bases
AGGCCGCCACGGGCGAGATAGAGGGCAGTTAAGCCAGGGGTTGTAGAGACAGGGGGATGGACTGAACAGCGTTGGCAGGT
CTTACCGGCCGCTGGTCCTG

Downstream 100 bases:

>100_bases
CGGCGCCCGGCATTTGGGGGAGTCTTGCACCGCGCCCAGACAGGAGTGTTCGACCATGAAGGTCGCGGCCATTTCATTCA
ACGACAACCACAGCCTCAGC

Product: Signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 795; Mature: 794

Protein sequence:

>795_residues
MTAVLLVVWISGILVAWRDRNNSLNDSGRLTEALTRVVAERISGSLRGLDLMLQDVDIHSRERSDPTELLNLMRHRSAGL
PEVRNVFIINADGKVTSSTLPSMLGLDLSRRPYFMTAAQTPIHGHLIITPPSVSPVTGKLGLVVARPITSPVGTFAGLIA
VALNPEFFSGALSGVVEGDVDRAVVANMDGNVLARLPDPGLHVGSSIRSGPLFSDYLPKARAGTFIAPSSFDGQDRLASY
QALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVLLGAALQLERRERERRGAETALKASEESYRILVDDQDDLI
HRYTQDTTLITVNRAYARFYGQTPDSLIGRKWIEFLPDEERTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTA
LYDALDNLTGYQTVGRDVTDSHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQ
DINVASAAEIEHEMAAVENEGRKFLRFRHRLSSGDIRDVEVYSSPLHVGGRAYLSSIVVDVSDRNRFEAELQAKTAELAR
SNAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDESSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLD
LEEVVADSCANLGLTGSSDEATVLVEHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDN
GLGIGAEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMVALPASRAAARGLATH

Sequences:

>Translated_795_residues
MTAVLLVVWISGILVAWRDRNNSLNDSGRLTEALTRVVAERISGSLRGLDLMLQDVDIHSRERSDPTELLNLMRHRSAGL
PEVRNVFIINADGKVTSSTLPSMLGLDLSRRPYFMTAAQTPIHGHLIITPPSVSPVTGKLGLVVARPITSPVGTFAGLIA
VALNPEFFSGALSGVVEGDVDRAVVANMDGNVLARLPDPGLHVGSSIRSGPLFSDYLPKARAGTFIAPSSFDGQDRLASY
QALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVLLGAALQLERRERERRGAETALKASEESYRILVDDQDDLI
HRYTQDTTLITVNRAYARFYGQTPDSLIGRKWIEFLPDEERTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTA
LYDALDNLTGYQTVGRDVTDSHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQ
DINVASAAEIEHEMAAVENEGRKFLRFRHRLSSGDIRDVEVYSSPLHVGGRAYLSSIVVDVSDRNRFEAELQAKTAELAR
SNAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDESSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLD
LEEVVADSCANLGLTGSSDEATVLVEHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDN
GLGIGAEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMVALPASRAAARGLATH
>Mature_794_residues
TAVLLVVWISGILVAWRDRNNSLNDSGRLTEALTRVVAERISGSLRGLDLMLQDVDIHSRERSDPTELLNLMRHRSAGLP
EVRNVFIINADGKVTSSTLPSMLGLDLSRRPYFMTAAQTPIHGHLIITPPSVSPVTGKLGLVVARPITSPVGTFAGLIAV
ALNPEFFSGALSGVVEGDVDRAVVANMDGNVLARLPDPGLHVGSSIRSGPLFSDYLPKARAGTFIAPSSFDGQDRLASYQ
ALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVLLGAALQLERRERERRGAETALKASEESYRILVDDQDDLIH
RYTQDTTLITVNRAYARFYGQTPDSLIGRKWIEFLPDEERTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTAL
YDALDNLTGYQTVGRDVTDSHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQD
INVASAAEIEHEMAAVENEGRKFLRFRHRLSSGDIRDVEVYSSPLHVGGRAYLSSIVVDVSDRNRFEAELQAKTAELARS
NAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDESSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLDL
EEVVADSCANLGLTGSSDEATVLVEHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDNG
LGIGAEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMVALPASRAAARGLATH

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=32.9365079365079, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI145693157, Length=266, Percent_Identity=30.0751879699248, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=393, Percent_Identity=24.4274809160305, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1788713, Length=253, Percent_Identity=22.9249011857708, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=31.1764705882353, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081816, Length=268, Percent_Identity=27.6119402985075, Blast_Score=73, Evalue=9e-14,
Organism=Escherichia coli, GI1786600, Length=239, Percent_Identity=29.7071129707113, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789149, Length=251, Percent_Identity=27.4900398406374, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788549, Length=270, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1789808, Length=230, Percent_Identity=28.695652173913, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1790346, Length=219, Percent_Identity=30.1369863013699, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787894, Length=218, Percent_Identity=29.8165137614679, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 87941; Mature: 87810

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVLLVVWISGILVAWRDRNNSLNDSGRLTEALTRVVAERISGSLRGLDLMLQDVDIHS
CHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCC
RERSDPTELLNLMRHRSAGLPEVRNVFIINADGKVTSSTLPSMLGLDLSRRPYFMTAAQT
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCC
PIHGHLIITPPSVSPVTGKLGLVVARPITSPVGTFAGLIAVALNPEFFSGALSGVVEGDV
CCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCC
DRAVVANMDGNVLARLPDPGLHVGSSIRSGPLFSDYLPKARAGTFIAPSSFDGQDRLASY
CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCHHHHHHH
QALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVLLGAALQLERRERERRGAET
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALKASEESYRILVDDQDDLIHRYTQDTTLITVNRAYARFYGQTPDSLIGRKWIEFLPDEE
HHHCCCCCCEEEECCCHHHHHHHCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCC
RTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTALYDALDNLTGYQTVGRDVTD
CEEHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHCCCCCH
SHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQ
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCEEEEECCHHHHHHCCCCC
DINVASAAEIEHEMAAVENEGRKFLRFRHRLSSGDIRDVEVYSSPLHVGGRAYLSSIVVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHEE
VSDRNRFEAELQAKTAELARSNAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDE
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLDLEEVVADSCANLGLTGSSDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCC
ATVLVEHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDN
CEEEECCCCHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCEECCCCCCCEEEEEECCC
GLGIGAEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMV
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
ALPASRAAARGLATH
EECCHHHHHCCCCCC
>Mature Secondary Structure 
TAVLLVVWISGILVAWRDRNNSLNDSGRLTEALTRVVAERISGSLRGLDLMLQDVDIHS
HHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCC
RERSDPTELLNLMRHRSAGLPEVRNVFIINADGKVTSSTLPSMLGLDLSRRPYFMTAAQT
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCC
PIHGHLIITPPSVSPVTGKLGLVVARPITSPVGTFAGLIAVALNPEFFSGALSGVVEGDV
CCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCC
DRAVVANMDGNVLARLPDPGLHVGSSIRSGPLFSDYLPKARAGTFIAPSSFDGQDRLASY
CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCHHHHHHH
QALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVLLGAALQLERRERERRGAET
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALKASEESYRILVDDQDDLIHRYTQDTTLITVNRAYARFYGQTPDSLIGRKWIEFLPDEE
HHHCCCCCCEEEECCCHHHHHHHCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCC
RTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTALYDALDNLTGYQTVGRDVTD
CEEHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHCCCCCH
SHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSAALFYGYPADVLKHMNIQ
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCEEEEECCHHHHHHCCCCC
DINVASAAEIEHEMAAVENEGRKFLRFRHRLSSGDIRDVEVYSSPLHVGGRAYLSSIVVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHEE
VSDRNRFEAELQAKTAELARSNAELEQFAYVASHDLRQPLRMVTSYVTLLERHLGETLDE
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETLSDLDLEEVVADSCANLGLTGSSDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCC
ATVLVEHPLPRILGISSELIRLFQNLIGNAVKYRHPERKPEIRLSSRRQGNEWIITVEDN
CEEEECCCCHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCEECCCCCCCEEEEEECCC
GLGIGAEHFERIFGMFQRLHAEGEFEGTGIGLAICRKIVTTHGGRIWVESEEGAGSRFMV
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
ALPASRAAARGLATH
EECCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]