Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 83309808

GI number: 83309808

Start: 768120

End: 769226

Strand: Reverse

Name: yfdE [H]

Synonym: amb0709

Alternate gene names: 83309808

Gene position: 769226-768120 (Counterclockwise)

Preceding gene: 83309809

Following gene: 83309806

Centisome position: 15.49

GC content: 69.65

Gene sequence:

>1107_bases
ATGATTGCCGATTGCCTTGCCGGGCTGAAGGTCCTCGACCTGTCCATGTACATTCCCGGCCCGCTGGCCACCCTGTGGCT
GTCCGACCTGGGCGCCGAGGTGGTCAAGGTGGAAAGCCCGGCCGGCGATCCCATGCGCACCATGGGGCCGGTGGACGCGG
ACGGCACCACCGCCTTCTACAAGCTGGCCAACGCCAACAAGACCATCGTGGCGCTGGACCTGAAATCCGCCGACGGCAAG
GCCCGCTTCGCCGAGATGGTGGCCGGGGCCGACGTGCTGCTGGAAGGCTTTCGCCCCGGGGTGATGGAGCGCCTGGGCTT
CGGCATCACGCGCCTGCACGAGATCAATCCCCGGCTGGTCCACTGCGCCCTGTCGGGCTATGGCGGCACCGGCCCCTTCG
CCACCCGTGCGGGCCACGACGTCACCTATCTGGCAGTGACCGGCCTGCTGGCGGCGTCCGGCCCGGCCGAGCGGCCCGTC
ATGACCTTTCCGCCCCTGGCCGACCATGCGGGCGCCATGCTGGCGGTCAACGCCATCCTGGCGGCGCTCTTAAAGCGCTC
CACCTCGGGCAAGGGCACCACCATCGACATCTCTCTGGCCGAAGCGGCGTTGTCGTGGATGGGCGGCGTGCTGACGATGG
CGCAGCGCTGGGGCGACCCGAAGCGCGAGCACGACCTGATCAACGGCGGCGCCGCCTTCTACCGCATCTACCAGACCAAG
GACGGCCGCTTCGCCGCCATCGCCGCGCTGGAGGAGAAGTTCTGGCAGTCGTTCTGCACGGCCATCGGCAAGCCCGACTG
GATCGCCCGCCAGGCCGAGCCCCTGCCCCAGCATGATCTGCTCGCCGACATGACGGCGCTGTTCGCCAGTCGCACCCTGG
CCGAGTGGACGGAAGTGCTGGAGCCCGCCGACTGCACCTTCGAACCGGTGCTGGAGCCCCACGAGGTCGCCACCCATCCC
CACCACGTGGAGCGCGGCTTCACCCATGTCAGCGACCAGGGTCTGGTCGAGGTGCTGCTGCCCGTGCTGATGGAGGGCGA
ACGCCCCCGCCGCCGCCGCCGCCTGACCGAGAAGGCGGCCGAGGCGGTCATCGCCGGATGGTCTTGA

Upstream 100 bases:

>100_bases
GAATCTCCGTCTGCTCCGCCGTTTCCTAACCGGACATGCCGGGCCAGGACGAGATCCCTCGCCTTCGCTCGGGATGACAA
TTCAATTCTGGAGCTAAAGC

Downstream 100 bases:

>100_bases
GCCACTCCCGCAGATCCGTCGCCATTTTGGCCAGGGGCGTGTCCCAGTCGCCGGCGGCGGGCTGGCGGTAGAGGCGGAGC
GTCGGATACCACGGGCTGTC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MIADCLAGLKVLDLSMYIPGPLATLWLSDLGAEVVKVESPAGDPMRTMGPVDADGTTAFYKLANANKTIVALDLKSADGK
ARFAEMVAGADVLLEGFRPGVMERLGFGITRLHEINPRLVHCALSGYGGTGPFATRAGHDVTYLAVTGLLAASGPAERPV
MTFPPLADHAGAMLAVNAILAALLKRSTSGKGTTIDISLAEAALSWMGGVLTMAQRWGDPKREHDLINGGAAFYRIYQTK
DGRFAAIAALEEKFWQSFCTAIGKPDWIARQAEPLPQHDLLADMTALFASRTLAEWTEVLEPADCTFEPVLEPHEVATHP
HHVERGFTHVSDQGLVEVLLPVLMEGERPRRRRRLTEKAAEAVIAGWS

Sequences:

>Translated_368_residues
MIADCLAGLKVLDLSMYIPGPLATLWLSDLGAEVVKVESPAGDPMRTMGPVDADGTTAFYKLANANKTIVALDLKSADGK
ARFAEMVAGADVLLEGFRPGVMERLGFGITRLHEINPRLVHCALSGYGGTGPFATRAGHDVTYLAVTGLLAASGPAERPV
MTFPPLADHAGAMLAVNAILAALLKRSTSGKGTTIDISLAEAALSWMGGVLTMAQRWGDPKREHDLINGGAAFYRIYQTK
DGRFAAIAALEEKFWQSFCTAIGKPDWIARQAEPLPQHDLLADMTALFASRTLAEWTEVLEPADCTFEPVLEPHEVATHP
HHVERGFTHVSDQGLVEVLLPVLMEGERPRRRRRLTEKAAEAVIAGWS
>Mature_368_residues
MIADCLAGLKVLDLSMYIPGPLATLWLSDLGAEVVKVESPAGDPMRTMGPVDADGTTAFYKLANANKTIVALDLKSADGK
ARFAEMVAGADVLLEGFRPGVMERLGFGITRLHEINPRLVHCALSGYGGTGPFATRAGHDVTYLAVTGLLAASGPAERPV
MTFPPLADHAGAMLAVNAILAALLKRSTSGKGTTIDISLAEAALSWMGGVLTMAQRWGDPKREHDLINGGAAFYRIYQTK
DGRFAAIAALEEKFWQSFCTAIGKPDWIARQAEPLPQHDLLADMTALFASRTLAEWTEVLEPADCTFEPVLEPHEVATHP
HHVERGFTHVSDQGLVEVLLPVLMEGERPRRRRRLTEKAAEAVIAGWS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=347, Percent_Identity=34.2939481268012, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI266456254, Length=347, Percent_Identity=34.2939481268012, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI300863124, Length=337, Percent_Identity=30.8605341246291, Blast_Score=169, Evalue=3e-42,
Organism=Homo sapiens, GI300863128, Length=337, Percent_Identity=30.8605341246291, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=35.8974358974359, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=37.109375, Blast_Score=153, Evalue=2e-37,
Organism=Homo sapiens, GI300863126, Length=329, Percent_Identity=27.6595744680851, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI13376042, Length=337, Percent_Identity=27.299703264095, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=39.1608391608392, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=39.1608391608392, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=261, Percent_Identity=36.0153256704981, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788717, Length=383, Percent_Identity=27.4151436031332, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786222, Length=347, Percent_Identity=26.8011527377522, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=340, Percent_Identity=30.5882352941176, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=328, Percent_Identity=30.7926829268293, Blast_Score=151, Evalue=5e-37,
Organism=Drosophila melanogaster, GI24585488, Length=345, Percent_Identity=33.9130434782609, Blast_Score=191, Evalue=6e-49,
Organism=Drosophila melanogaster, GI24648431, Length=326, Percent_Identity=29.7546012269939, Blast_Score=142, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39629; Mature: 39629

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADCLAGLKVLDLSMYIPGPLATLWLSDLGAEVVKVESPAGDPMRTMGPVDADGTTAFY
CCHHHHCCHHHEEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCEEEE
KLANANKTIVALDLKSADGKARFAEMVAGADVLLEGFRPGVMERLGFGITRLHEINPRLV
EECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCEEE
HCALSGYGGTGPFATRAGHDVTYLAVTGLLAASGPAERPVMTFPPLADHAGAMLAVNAIL
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHH
AALLKRSTSGKGTTIDISLAEAALSWMGGVLTMAQRWGDPKREHDLINGGAAFYRIYQTK
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEEEECC
DGRFAAIAALEEKFWQSFCTAIGKPDWIARQAEPLPQHDLLADMTALFASRTLAEWTEVL
CCCEEHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EPADCTFEPVLEPHEVATHPHHVERGFTHVSDQGLVEVLLPVLMEGERPRRRRRLTEKAA
CCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
EAVIAGWS
HHHHCCCC
>Mature Secondary Structure
MIADCLAGLKVLDLSMYIPGPLATLWLSDLGAEVVKVESPAGDPMRTMGPVDADGTTAFY
CCHHHHCCHHHEEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCEEEE
KLANANKTIVALDLKSADGKARFAEMVAGADVLLEGFRPGVMERLGFGITRLHEINPRLV
EECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCEEE
HCALSGYGGTGPFATRAGHDVTYLAVTGLLAASGPAERPVMTFPPLADHAGAMLAVNAIL
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHH
AALLKRSTSGKGTTIDISLAEAALSWMGGVLTMAQRWGDPKREHDLINGGAAFYRIYQTK
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEEEECC
DGRFAAIAALEEKFWQSFCTAIGKPDWIARQAEPLPQHDLLADMTALFASRTLAEWTEVL
CCCEEHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EPADCTFEPVLEPHEVATHPHHVERGFTHVSDQGLVEVLLPVLMEGERPRRRRRLTEKAA
CCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
EAVIAGWS
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]