| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is aphA [H]
Identifier: 83309806
GI number: 83309806
Start: 764099
End: 765772
Strand: Reverse
Name: aphA [H]
Synonym: amb0707
Alternate gene names: 83309806
Gene position: 765772-764099 (Counterclockwise)
Preceding gene: 83309808
Following gene: 83309799
Centisome position: 15.42
GC content: 66.37
Gene sequence:
>1674_bases ATGCCGAACGGCGCTACCAAGAGACCCGTCTTACGGGCCAGCACCAGTGCCTTGGTGATGGGTGTTCTGGCCGTACTGTT CGTCCTTGCAACCTTCAGCGCCATGGCGTGGCAAAGGCGGGCCGACCTTCTGCATGACCGTCAGGTCAACAATGAGCGGC TGGCCGATACCCTGGCCGAGCATACGGGCGGCATGTTCCGACAATCGGCCATGGTCCTTTCCCTGGTGAGCGAGCGCCTC GACCATCAGCGCGGCCTTTCCGCCCATGACCCGGTCTTTGGCGGATTCCTGGCCAACGTGCTGCGGCACGCCTCCACGGT GACGGCCATCCGGGTCATCACGCCCGGAGGGCATTACCTGCATTCCTATCCCGAAATACCGCCCGAGGGCACCTCGGTCG CCGATCGTGACTACGTCCAGGCCCACCTGGCGGGCGAAAGCAGCCTCGTCATCGGCAAGCCTATCATCAGTCGGGTCAAC GGCAAGCGGGTCCTGCCAGTCAGCCAGGCCCACCGAAGCCCCGACGGCAGGCTGGTGGCGGTCATCGCCCTGATGATCCA ACTGGACCACATGAACGAGCTGTTCGATTCCATCCGGCAAAGACCCAACGGCACCGTCGCCCTGTTCAACGCCGACGGCA CTCTGCTGAGCCGGGGGCCTTTCGACGAAGGGCTGATGGGCAAGGACTTCTCCCAGGGCCCGCTGTTCAAGGAGCATCTG CCCCAGGCCCCGACCGGCAGCTACACCAGCGTAGTGGCCACCGACGGCAAATTGCGCCAGGCCAGCTACCGGCGCCTGGG CGACGTTCCGGTGGTGGTCTCGGTCTCCACCCTGCATGACGACACCATGATGCAATGGGAGGGCTATGCCACCACCTTGC TGACCATCGCCATTCCCCTGGTTCTGGCGGCGGCGGCCATCACCTGGGCCATGCATCGCCAATTGGTGGCCCGCGAGCGC TTCGAGCGCCTGCTGGCCCGGCGCAGCGCCGACCTGGAACTGGCCAACGAGGAACTGCGCCACATCGCCGAGATCTCGGC CCATCACCTGCAGGAGCCGCTCCGCACCGTGCTGTCCTACGCCCAATTGCTGGTGCGCAAGACCGCCCCCGACGGCAATT CCGAGGTGGACGATTATCTGGGCTTCATCCGCTCGGGCATCGAGCGCATGCGGGCTCAGTTGAACGCCCTGCAGCGCTAT CTCGGCGTGGCGCAGTGCCGCCCCCACGAGCCCGTGTCCCTGCCGCGGGTCCTGGCCGAGACCATAGACCTGCTGGAACC GCGCCTCGCCGCCGCCGAGGCCGAGATCCGGGCCCGCGATCTGCCCGAGATCATGGGAGACCGCCAGCATCTGTCGGGAC TGTTCCACCACCTGATCTCGGCCATCCTGGAGCGCCGGCGCCCCGACACCTATCAGAAGATTGGCCTGAGCGCCGAACGC GACGGCGAGATGTGGCATCTGCTGATCCGCGCCGACAACACCGACATCGATTTCGGCGAGGGCGAGACCTCGTTCCCGCT GCTGGCCCCCGGCAGCAGCCCGACGCGGGGTGGCAACCCGACGCTCAGCCTGGCCATCTGCCGCAAGATCGTCCAGTTGC ACGGCGGCAGCATGTGGGCCGAAACCACCGGTGACGGCGAAACCCGCCTGCATGTCCTGTTGCCCGCCGAGTAG
Upstream 100 bases:
>100_bases CTATTGCCACAAGCACTCCATGCATATGCACGGCATGAGATATTGATCCCCACCAATCGGCTGCTATGATGCCGCCCTGC CAAATGGGTAGAAGACGACT
Downstream 100 bases:
>100_bases CTTTTTTCCACCATGCCCCTCAATCGCCGGGCGGGCGCGAGCGCCCTTGGCTCCCGCCGCATAAGCGGCGCGGCCCCTTG GGCCTAGCTGGATCCGTCCG
Product: Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MPNGATKRPVLRASTSALVMGVLAVLFVLATFSAMAWQRRADLLHDRQVNNERLADTLAEHTGGMFRQSAMVLSLVSERL DHQRGLSAHDPVFGGFLANVLRHASTVTAIRVITPGGHYLHSYPEIPPEGTSVADRDYVQAHLAGESSLVIGKPIISRVN GKRVLPVSQAHRSPDGRLVAVIALMIQLDHMNELFDSIRQRPNGTVALFNADGTLLSRGPFDEGLMGKDFSQGPLFKEHL PQAPTGSYTSVVATDGKLRQASYRRLGDVPVVVSVSTLHDDTMMQWEGYATTLLTIAIPLVLAAAAITWAMHRQLVARER FERLLARRSADLELANEELRHIAEISAHHLQEPLRTVLSYAQLLVRKTAPDGNSEVDDYLGFIRSGIERMRAQLNALQRY LGVAQCRPHEPVSLPRVLAETIDLLEPRLAAAEAEIRARDLPEIMGDRQHLSGLFHHLISAILERRRPDTYQKIGLSAER DGEMWHLLIRADNTDIDFGEGETSFPLLAPGSSPTRGGNPTLSLAICRKIVQLHGGSMWAETTGDGETRLHVLLPAE
Sequences:
>Translated_557_residues MPNGATKRPVLRASTSALVMGVLAVLFVLATFSAMAWQRRADLLHDRQVNNERLADTLAEHTGGMFRQSAMVLSLVSERL DHQRGLSAHDPVFGGFLANVLRHASTVTAIRVITPGGHYLHSYPEIPPEGTSVADRDYVQAHLAGESSLVIGKPIISRVN GKRVLPVSQAHRSPDGRLVAVIALMIQLDHMNELFDSIRQRPNGTVALFNADGTLLSRGPFDEGLMGKDFSQGPLFKEHL PQAPTGSYTSVVATDGKLRQASYRRLGDVPVVVSVSTLHDDTMMQWEGYATTLLTIAIPLVLAAAAITWAMHRQLVARER FERLLARRSADLELANEELRHIAEISAHHLQEPLRTVLSYAQLLVRKTAPDGNSEVDDYLGFIRSGIERMRAQLNALQRY LGVAQCRPHEPVSLPRVLAETIDLLEPRLAAAEAEIRARDLPEIMGDRQHLSGLFHHLISAILERRRPDTYQKIGLSAER DGEMWHLLIRADNTDIDFGEGETSFPLLAPGSSPTRGGNPTLSLAICRKIVQLHGGSMWAETTGDGETRLHVLLPAE >Mature_556_residues PNGATKRPVLRASTSALVMGVLAVLFVLATFSAMAWQRRADLLHDRQVNNERLADTLAEHTGGMFRQSAMVLSLVSERLD HQRGLSAHDPVFGGFLANVLRHASTVTAIRVITPGGHYLHSYPEIPPEGTSVADRDYVQAHLAGESSLVIGKPIISRVNG KRVLPVSQAHRSPDGRLVAVIALMIQLDHMNELFDSIRQRPNGTVALFNADGTLLSRGPFDEGLMGKDFSQGPLFKEHLP QAPTGSYTSVVATDGKLRQASYRRLGDVPVVVSVSTLHDDTMMQWEGYATTLLTIAIPLVLAAAAITWAMHRQLVARERF ERLLARRSADLELANEELRHIAEISAHHLQEPLRTVLSYAQLLVRKTAPDGNSEVDDYLGFIRSGIERMRAQLNALQRYL GVAQCRPHEPVSLPRVLAETIDLLEPRLAAAEAEIRARDLPEIMGDRQHLSGLFHHLISAILERRRPDTYQKIGLSAERD GEMWHLLIRADNTDIDFGEGETSFPLLAPGSSPTRGGNPTLSLAICRKIVQLHGGSMWAETTGDGETRLHVLLPAE
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 61329; Mature: 61198
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNGATKRPVLRASTSALVMGVLAVLFVLATFSAMAWQRRADLLHDRQVNNERLADTLAE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH HTGGMFRQSAMVLSLVSERLDHQRGLSAHDPVFGGFLANVLRHASTVTAIRVITPGGHYL HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHH HSYPEIPPEGTSVADRDYVQAHLAGESSLVIGKPIISRVNGKRVLPVSQAHRSPDGRLVA CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHCCCCEECCHHHHCCCCCCHHHH VIALMIQLDHMNELFDSIRQRPNGTVALFNADGTLLSRGPFDEGLMGKDFSQGPLFKEHL HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHC PQAPTGSYTSVVATDGKLRQASYRRLGDVPVVVSVSTLHDDTMMQWEGYATTLLTIAIPL CCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCHHHHHHHHHHHH VLAAAAITWAMHRQLVARERFERLLARRSADLELANEELRHIAEISAHHLQEPLRTVLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQLLVRKTAPDGNSEVDDYLGFIRSGIERMRAQLNALQRYLGVAQCRPHEPVSLPRVLAE HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH TIDLLEPRLAAAEAEIRARDLPEIMGDRQHLSGLFHHLISAILERRRPDTYQKIGLSAER HHHHHCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC DGEMWHLLIRADNTDIDFGEGETSFPLLAPGSSPTRGGNPTLSLAICRKIVQLHGGSMWA CCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE ETTGDGETRLHVLLPAE CCCCCCCEEEEEEECCC >Mature Secondary Structure PNGATKRPVLRASTSALVMGVLAVLFVLATFSAMAWQRRADLLHDRQVNNERLADTLAE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH HTGGMFRQSAMVLSLVSERLDHQRGLSAHDPVFGGFLANVLRHASTVTAIRVITPGGHYL HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHH HSYPEIPPEGTSVADRDYVQAHLAGESSLVIGKPIISRVNGKRVLPVSQAHRSPDGRLVA CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHCCCCEECCHHHHCCCCCCHHHH VIALMIQLDHMNELFDSIRQRPNGTVALFNADGTLLSRGPFDEGLMGKDFSQGPLFKEHL HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHC PQAPTGSYTSVVATDGKLRQASYRRLGDVPVVVSVSTLHDDTMMQWEGYATTLLTIAIPL CCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCHHHHHHHHHHHH VLAAAAITWAMHRQLVARERFERLLARRSADLELANEELRHIAEISAHHLQEPLRTVLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQLLVRKTAPDGNSEVDDYLGFIRSGIERMRAQLNALQRYLGVAQCRPHEPVSLPRVLAE HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH TIDLLEPRLAAAEAEIRARDLPEIMGDRQHLSGLFHHLISAILERRRPDTYQKIGLSAER HHHHHCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC DGEMWHLLIRADNTDIDFGEGETSFPLLAPGSSPTRGGNPTLSLAICRKIVQLHGGSMWA CCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE ETTGDGETRLHVLLPAE CCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]