Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 83309652

GI number: 83309652

Start: 600116

End: 601198

Strand: Reverse

Name: rpfG [H]

Synonym: amb0553

Alternate gene names: 83309652

Gene position: 601198-600116 (Counterclockwise)

Preceding gene: 83309654

Following gene: 83309649

Centisome position: 12.1

GC content: 65.84

Gene sequence:

>1083_bases
GTGGCCCCCACCCTCCTTGGCGCCCCTCCCTCGATGCATTTGAAGCGGGATCAGAACATGACCGACATGCGATCGAGAGC
CGTAGACCTTCTGGTGGTCGAGGACAATCCGGCGGATGCCCGCCTGATCGAACTGCTGCTGAGCGAGGTCGGCGGCATCC
ATTGCCGCCGCGCCGATTGCCTGGGACAAGCCATGGGCATGGTGGCCGCAGAGCCCCCCGATGCCGTCCTTCTCGACCTG
TCGCTGCCCGATGCCCATGGCATCGAGACGGTGGAGCGGTTCCGCGTCGCGGCCCCCACCCTGCCCATCGTCATCTGCAC
CGGCCTGGACGATGAATCCATGGGTCTGCTGGCCCTGCAGCACGGCTGCCAGGACTATCTGGTCAAGGGCCAGGGCGATG
GCAACCTGATCCGCCGTACCATCCTCTACGCCATCGAACGCAAAGCCGTGGAGGAGGAGCGCCGCGTCACCGCCGAACGC
CTGAAGCGCGTGTTGCTTCAGACCGTCCGTTCGCTGTCGCTGACCCTGGAGATGCGCGATCCCTACACCACCGGCCATCA
GCGGCGGGTGGCGCAGTTGTCCACTGCCATCGGCCAGCGGATGGGACTGTCCGAGGCGGTCGTGGAGGGCCTGCGCACCG
GCGGATTGCTGCACGACATCGGCAAGATTCACATCCCCGCCGAGTTTCTCAGCCGCCCGGGCAAGCTGTCCGCCGAGGTG
CACAAGGTCATCCGCATGCATCCCCAGATGGGCTGGGAGATCATGAAGGACATCGAATTCCCCTGGCCGGTGGCCGACAT
GATCCGCCAGCATCACGAAAGGCTGGACGGCAGCGGCTACCCTCTGGGACTGAAGGGCGACGAGATCATTCTGGAATCAA
GGATCATCGCCGTGGCCGACGTGCTGGAGGCCATCTCGTCCCATCGCCCCTACCGCCCGGCCCTGGGACTGGACGTCGCC
GTCGCCGAACTGCGCGAGCATTCGGGCAGCCGCTATGACCCCGCCGTGGTACAGGCCTGCATCGAGGTTGTGGAAGAGAG
AGGGCCGGGCATCCTCGACGAGGATCCGTCGCCCGTGCTGTAG

Upstream 100 bases:

>100_bases
TCAGCCAGACCATGACCAAGTGCATAAGCAGCAAGCCTGCCGCGCCTTCAGCCCCCTTAACATCCCCGACACACTGTGTC
ACAACGTTGGGGTGGTGCAC

Downstream 100 bases:

>100_bases
GCCCGCGCGCCAGCCGCTATTCGGCGGCGACGACGGCGGCGAGGGTACCGCGCCCGGCCAGACGGCGCAATTGCGCCATC
AGCAATTCCCGCGGGTTATG

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MAPTLLGAPPSMHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADCLGQAMGMVAAEPPDAVLLDL
SLPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQHGCQDYLVKGQGDGNLIRRTILYAIERKAVEEERRVTAER
LKRVLLQTVRSLSLTLEMRDPYTTGHQRRVAQLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEV
HKVIRMHPQMGWEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVADVLEAISSHRPYRPALGLDVA
VAELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL

Sequences:

>Translated_360_residues
MAPTLLGAPPSMHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADCLGQAMGMVAAEPPDAVLLDL
SLPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQHGCQDYLVKGQGDGNLIRRTILYAIERKAVEEERRVTAER
LKRVLLQTVRSLSLTLEMRDPYTTGHQRRVAQLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEV
HKVIRMHPQMGWEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVADVLEAISSHRPYRPALGLDVA
VAELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL
>Mature_359_residues
APTLLGAPPSMHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADCLGQAMGMVAAEPPDAVLLDLS
LPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQHGCQDYLVKGQGDGNLIRRTILYAIERKAVEEERRVTAERL
KRVLLQTVRSLSLTLEMRDPYTTGHQRRVAQLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEVH
KVIRMHPQMGWEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVADVLEAISSHRPYRPALGLDVAV
AELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 39643; Mature: 39512

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTLLGAPPSMHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADC
CCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEHHHHH
LGQAMGMVAAEPPDAVLLDLSLPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQ
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
HGCQDYLVKGQGDGNLIRRTILYAIERKAVEEERRVTAERLKRVLLQTVRSLSLTLEMRD
HCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
PYTTGHQRRVAQLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEV
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCEEECHHHHCCCCCCHHHH
HKVIRMHPQMGWEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVAD
HHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHH
VLEAISSHRPYRPALGLDVAVAELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
APTLLGAPPSMHLKRDQNMTDMRSRAVDLLVVEDNPADARLIELLLSEVGGIHCRRADC
CCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEHHHHH
LGQAMGMVAAEPPDAVLLDLSLPDAHGIETVERFRVAAPTLPIVICTGLDDESMGLLALQ
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
HGCQDYLVKGQGDGNLIRRTILYAIERKAVEEERRVTAERLKRVLLQTVRSLSLTLEMRD
HCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
PYTTGHQRRVAQLSTAIGQRMGLSEAVVEGLRTGGLLHDIGKIHIPAEFLSRPGKLSAEV
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCEEECHHHHCCCCCCHHHH
HKVIRMHPQMGWEIMKDIEFPWPVADMIRQHHERLDGSGYPLGLKGDEIILESRIIAVAD
HHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHH
VLEAISSHRPYRPALGLDVAVAELREHSGSRYDPAVVQACIEVVEERGPGILDEDPSPVL
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]