Definition Staphylococcus aureus RF122, complete genome.
Accession NC_007622
Length 2,742,531

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The map label for this gene is flgJ [C]

Identifier: 82752225

GI number: 82752225

Start: 2667875

End: 2669734

Strand: Direct

Name: flgJ [C]

Synonym: SAB2519

Alternate gene names: 82752225

Gene position: 2667875-2669734 (Clockwise)

Preceding gene: 82752223

Following gene: 82752234

Centisome position: 97.28

GC content: 32.53

Gene sequence:

>1860_bases
ATGCCTAAAAATAAAATTTTAATTTATTTGCTATCAACTACGCTCGTATTACCTACTTTAGTTTCACCTACCGCTTATGC
TGATACACCTCAAAAAGATACTACAGCTAAGACAACATCTCATGATTCAAAAAAATCTAATGACGATGAAACTTCTAAGG
ATACTACAAGTAAAGATATTGATAAAGCAGACAACAATAATACAAGTAACCAAGACAATAACGACAAAAAATTTAAAACT
ATAGACGACAGCACTTCAGACTCTAACAATATCATTGATTTTATTTATAAGAATTTACCACAAACCAATATAAACCAATT
GCTAACCAAAAATAAATACGATGATAATTACTCATTAACAACTTTAATCCAAAACTTATTCAATTTAAATTCGGATATTT
CTGATTACGAACAACCTCGTAATGGTGAAAAGTCAACAAATGATTCGAATAAAAACAGTGCCAATAGCATCAAAAATGAC
ACTGATACGCAATCATCTAAACAAGATAAAGCAGACAATCAAAAAGCACCTAAATCAAACAATACAAAACCAAGTACATC
TAATAAGCAACCAAATTCGCCAAAGCCAACACAACCTAATCAATCAAATAGTCAACCAGCAAGTGACGATAAAGCAAATC
AAAAATCTTCATCGAAAGATAATCAATCAATGTCAGATTCGGCTTTAGACTCTATTTTGGATCAATACAGTGAAGATGCA
AAGAAAACACAAAAAGATTACGCATCTCAATCTAAAAAAGACAAAAATGAAAAATCTAATACAAAGAATCCACAGTTACC
AACACAAGATGAATTGAAACATAAATCTAAACCTGCTCAATCATTCAATAACGATGTTAATCAAAAGGATACACGTGCAA
CATCATTATTCGAAACAGATCCTAGTATATCTAACAATGATGATAGTGGACAATTTAACGTTGTTGACTCAAAAGATACA
CGTCAATTTGTAAAATCAATTGCTAAAGATGCACATCGTATTGGTCAAGATAACGATATTTATGCATCTGTCATGATTGC
CCAAGCAATCTTAGAATCTGACTCAGGTCGTAGTGCTTTAGCTAAGTCACCAAACCATAATTTATTCGGTATCAAAGGTG
CTTTTGAAGAGAATTCTGTTCCTTTTAACACATTAGAAGCTGATGGTAATCAATTGTATAGTATTAATGCTGGATTCCGA
AAATATCCAAGCACGAAAGAATCACTAAAAGATTACTCTGACCTTATTAAAAATGGTATTGATGGCAATCGAACAATTTA
TAAACCAACATGGAAATCGGAAGCCGATTCTTATAAAGATGCAACATCACACTTATCTAAAACGTATGCTACAGATCCAA
ACTATGCTAAGAAATTAAACAGTATTATTAAACACTATCAATTAACTCAGTTTGACGATGAACGCATGCCAGATTTAGAT
AAATATGAACGTTCTATCAAGGATTATGATGATTCATCAGATGAATTCAAACCTTTCCGCGAGGTATCTGATAGTATGCC
ATATCCACATGGCCAATGTACTTGGTACGTATATAACCGTATGAAACAATTTGGTACATCTATCTCAGGTGATTTAGGTG
ATGCACATAATTGGAATAATCGAGCTCAATACCGTGATTATCAAGTAAGTTATACACCAAAACGTCATGCTGCTGTTGTA
TTTGAGGCTGGACAATTTGGTGCAGATCAACATTACGGTCATGTAGCATTTGTAGAAAAAGTTAACAGTGATGGTTCTAT
CGTTATTTCAGAATCCAATGTTAAAGGATTAGGTATCATTTCTCATAGAACTATCAACGCATCTGCCGCTGAAGAATTAT
CATATATTACAGGTAAATAA

Upstream 100 bases:

>100_bases
ATTGATACCTATCAACTATTTTCAGCATACGATAAATTATAACAAATCATAGTTTATTATCACACTTAATTATTATATTT
TTCAAGGGAGAATACGAAAT

Downstream 100 bases:

>100_bases
GTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATT
TCTTATTCAATTAAACCCGA

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramoylhydrolase; Lysozyme; Peptidoglycan hydrolase; Pg-hydrolase 2 [H]

Number of amino acids: Translated: 619; Mature: 618

Protein sequence:

>619_residues
MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKT
IDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKND
TDTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA
KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDT
RQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFR
KYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD
KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVV
FEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK

Sequences:

>Translated_619_residues
MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKT
IDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKND
TDTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA
KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDT
RQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFR
KYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD
KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVV
FEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK
>Mature_618_residues
PKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKTI
DDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDT
DTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDAK
KTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDTR
QFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRK
YPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLDK
YERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVVF
EAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK

Specific function: May work in concert with and potentiate the processive hydrolytic action of muramidase-1, which requires binding of the enzyme to non-reducing ends of glycan chains. Hydrolysis in the midst of glycan chains would increase the number of binding sites for m

COG id: COG1705

COG function: function code NU; Muramidase (flagellum-specific)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 LysM repeats [H]

Homologues:

Organism=Escherichia coli, GI1787321, Length=152, Percent_Identity=28.2894736842105, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013338
- InterPro:   IPR002901
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01832 Glucosaminidase; PF01476 LysM [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 69310; Mature: 69178

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDI
CCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
DKADNNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT
HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHH
TLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDTDTQSSKQDKADNQKAPKSN
HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCC
NTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHEECC
PSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSAL
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
AKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRKYPSTKESLKDYSDLIKNGI
HCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHCCC
DGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNN
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC
RAQYRDYQVSYTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGII
CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEE
SHRTINASAAEELSYITGK
EECCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDI
CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
DKADNNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT
HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHH
TLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDTDTQSSKQDKADNQKAPKSN
HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCC
NTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHEECC
PSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSAL
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
AKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRKYPSTKESLKDYSDLIKNGI
HCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHCCC
DGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNN
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC
RAQYRDYQVSYTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGII
CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEE
SHRTINASAAEELSYITGK
EECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1347040; 2753858 [H]