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The map label for this gene is ydeD [H]

Identifier: 82752117

GI number: 82752117

Start: 2543199

End: 2543951

Strand: Direct

Name: ydeD [H]

Synonym: SAB2408

Alternate gene names: 82752117

Gene position: 2543199-2543951 (Clockwise)

Preceding gene: 82752116

Following gene: 82752125

Centisome position: 92.73

GC content: 34.26

Gene sequence:

>753_bases
ATGTACAAAATGATGCAACCCAAACGTTCTATATTTAGCGTATTCCAAGATCGACGTATGTTAGGCAAATTACTTATCTT
CAGTATACTGGGCATGTTAGTTGTACAATATGCTTATATGGCATCTATTAATACAGGTAATGGTGCGATTGCAACATTAC
TACAATACATTGCGCCAGTTTATATTATTATTTGGTTTGTCATAAGAGGCGTTGCAAAACTAACATTATTTGATGTGCTT
GCTATTATCATGACACTATTAGGAACATTTTTATTATTAACGAATGGTTCATTTTCTAATTTAGTCGTCAATCCTGCAAG
TTTATTCTGGGGTATTTTAGCTGGTGTAGCACTCGCTTTTTACACAATTTATCCTTCAGACCTACTTAACCGCTTCGGTT
CGATTCTAATTGTCAGGTGGGCAATGCTTATTTCTGGTGTTGCGATGAATTTACGCCATCCAATTTGGCACATTGATATC
ACTAAATGGGACATATCAATTATATTATTTTTAATCTTTGGTATTATCGGTGGTACCGCACTCGCATTTTATTTCTTTAT
CGACAGTTTACAATACATATCAGCGAAAGAAACAACATTATTCGGAACTGTTGAACCTGTCGTAGCCGTTATCGCAAGCA
GTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTTCTATCA
CTTAAAAGACAACCTGAAACATTAGATGAATAA

Upstream 100 bases:

>100_bases
AGGTGGTACTGTTTCTGATTTCTTGTTCAAATATAAGAATATTAATGTCGATTGATACGTCACTGCTCGACTTGTAGTCA
GTGGTGTTTTTTTACTTATT

Downstream 100 bases:

>100_bases
GAAAACTCTGATAATCACTTTAGCAAGTAACTATTTTAGCAATCTAGCTACCTTGTATGTGATATCAGAGTTTTTTATTT
TAGTTAATAATATTTTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNGAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVL
AIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVRWAMLISGVAMNLRHPIWHIDI
TKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILFLS
LKRQPETLDE

Sequences:

>Translated_250_residues
MYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNGAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVL
AIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVRWAMLISGVAMNLRHPIWHIDI
TKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILFLS
LKRQPETLDE
>Mature_250_residues
MYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNGAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVL
AIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVRWAMLISGVAMNLRHPIWHIDI
TKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILFLS
LKRQPETLDE

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=244, Percent_Identity=32.7868852459016, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 28096; Mature: 28096

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNGAIATLLQYIAPV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YIIIWFVIRGVAKLTLFDVLAIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECHHHHHHHHHHHHHHHH
YTIYPSDLLNRFGSILIVRWAMLISGVAMNLRHPIWHIDITKWDISIILFLIFGIIGGTA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
LAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILFLS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRQPETLDE
HCCCCCCCCC
>Mature Secondary Structure
MYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNGAIATLLQYIAPV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YIIIWFVIRGVAKLTLFDVLAIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECHHHHHHHHHHHHHHHH
YTIYPSDLLNRFGSILIVRWAMLISGVAMNLRHPIWHIDITKWDISIILFLIFGIIGGTA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
LAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILFLS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRQPETLDE
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]