Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 82751903

GI number: 82751903

Start: 2317855

End: 2318802

Strand: Reverse

Name: lytR [H]

Synonym: SAB2187c

Alternate gene names: 82751903

Gene position: 2318802-2317855 (Counterclockwise)

Preceding gene: 82751904

Following gene: 82751902

Centisome position: 84.55

GC content: 34.6

Gene sequence:

>948_bases
TTGAAACGTTCGTCTAAAAGTAAAATGAGCCTACCGAAAAAAATATTTTTATGGGTATTCGGTATTTTAGTAATCTTAGC
GATTGTAGCTGTTGTGTATGTAGCTGCTAAAATTTTTATTACTGGTAATAAGATACACAATCCGTTAGATCGCAATCATT
CAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTATTTGGTGTCGATTCAGATGCT
GATCGTAAGAAAAAGGGTGGCGGAGAGCGTAGTGATAGTATTATGATTTTATCTATCAACCCTAAAACGAAGAAAACTGA
AATAGTAAGTATACCGCGTGATACAAGAGCGGAAATTGTTGGCCGTGGTACTACTGAAAAAGTTGCACATGCTTATGCAT
ATGGTGGACCAAATATGGCTGTTAAATCACTTGAAAAATTAATGAATGTGCCAATTGATCATTATGCGACAATCGATATG
GATGGTTTGCATAATATGATAGATAGCATCGGCGGTGTTGATGTAGTAAGTAATGATACATTCACTGTTGATGGTGTTCG
TTTTACAAAAGGACAGCAAACACATGTAAATGGTGATCAAGCATTGAAATTTATTAGAAGTCGTAAAGAAGAAGGTGATG
GTGGTGACTTTGGTCGACAACAACGTCAGCAAATTGTACTTGAAGCGATGGCTAATAAGATTGCAAGCCCATCATCGATT
ACACATTTTAATAGTCTAATGAATGAAATTCAAAATAATGTTAAAACAGATTTAACATTAGGTGATTTGAATACAATTAG
AAGCAATTATAAAGATGCTAATGACACGATTAATAAACATCAATTGAGTGGTCAAGGCGGCATTCAAAGTGACGGATTGT
ACTACTTCATTCCTAGTGAGCAGTCAAAAGCTGAAAGTACTAAGTTATTAAAAGATAATCTAGAGTAG

Upstream 100 bases:

>100_bases
AGTTATACGTCTACAGAAGTATAGTAAAAAAATTATTTTACTATATAATAAATAGAGAAAACAGACAAAGTATGTAAGGA
ATAGTAAAGGAGTGGTGGGA

Downstream 100 bases:

>100_bases
TAAACTAAGGGAAAATAAGTTATCAAAATTGTACACAGATTAATTAGATAGAATGAGCTGTAAAAAGAATAACGAATAGA
ATTAATAGCCCCTAAATAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDA
DRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKVAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDM
DGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGDGGDFGRQQRQQIVLEAMANKIASPSSI
THFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Sequences:

>Translated_315_residues
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDA
DRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKVAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDM
DGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGDGGDFGRQQRQQIVLEAMANKIASPSSI
THFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE
>Mature_315_residues
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDA
DRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKVAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDM
DGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGDGGDFGRQQRQQIVLEAMANKIASPSSI
THFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 34768; Mature: 34768

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKK
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHHHCC
VSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIV
CCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHH
GRGTTEKVAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDT
CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEECCCE
FTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGDGGDFGRQQRQQIVLEAMANKIASPSSI
EEECCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
THFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSE
HHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEECCC
QSKAESTKLLKDNLE
CCHHHHHHHHHHCCC
>Mature Secondary Structure
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKK
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHHHCC
VSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIV
CCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHH
GRGTTEKVAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDT
CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEECCCE
FTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGDGGDFGRQQRQQIVLEAMANKIASPSSI
EEECCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
THFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSE
HHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEECCC
QSKAESTKLLKDNLE
CCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA