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The map label for this gene is ydbM [H]

Identifier: 82751873

GI number: 82751873

Start: 2290168

End: 2291322

Strand: Reverse

Name: ydbM [H]

Synonym: SAB2157c

Alternate gene names: 82751873

Gene position: 2291322-2290168 (Counterclockwise)

Preceding gene: 82751874

Following gene: 82751872

Centisome position: 83.55

GC content: 34.37

Gene sequence:

>1155_bases
ATGAATGATATGGATAATTCCTTTTTAATAACAACGGAAATTCAAAGAAAATGGATTGAAAAATTCAAAGCAATTGGAGA
TACATTTAAGGCTAAGTCTGAATATAATGATCAACATAGCCAATTTCCATATAAAAATATTGAATGGTTAATTAAAGAAG
GTTATGGAAAATTAACGTTACCAAAAGCATATGGTGGTGAAGGTGCGACCATAGAAGACATGGTTATTTTGCAATCATTT
TTAGGCGAACTTGATGGTGCCACAGCATTATCTATTGGTTGGCATGTGAGTGTCGTAGGACAAATTTATGAACAGAAATT
ATGGTCTCAAGATATGTTGGAGCAATTTGCTGTTGAAATTAATAATGGTGCATTAGTTAATAGAGCAGTTAGTGAAGCTG
AAATGGGTAGTCCAATAAGAGGGGGAAGACCAAGTACACATGCTGTTAAAGCTGATGATGGGTATATTTTAAATGGTGTG
AAGACATATACTTCAATGAGTAAAGCACTAACACATATTATTGTTGCTGCTTATATAGAAGAATTAGAAAGTGTTGGTTT
TTTCTTAGTGGACAGGAATTTGCCTGGTGTTGAAATTGCCGATAATTGGGACGTATTAGGTATGCGAGCGACAGAAAGTC
ATGATTTAATATTAAATGATGTAAAAGTACCATTAAAACATTTAGTGGAAACAGAGAAAAGTAAAGCGCCAAATGGTTGG
ATATTGCATATACCAAGCTGTTATTTAGGTATAGCACAAGCTGCTAGAAATTATGCTGTAGACTTTGCAATCCAACATAG
CCCTAATAGTATTGAAGGAACGATTGCAACATTGCCAACTGTGCAACAAAATTTAGGGAAAATGGAAACGCTATTGTTAT
GTACGAGACAATTTTTATGGAGTACAGCAAAAGGCTATCAACAATATAAAGATGACAGTCAGATAAGAAATTCAACAAGT
GCGAGTAAAGTGATGGTAATGAATCAAGGGCTTGAAGTGATTGATTTAGCGATGAGAATAGTTGGTGCTAAAAGCTTAGA
AATGAATCGACCATTACAACGTTACTATCGTGACATGCGTGCAGGATTACACAATCCACCTATGGAAGATGCAGCATATA
CAAATATTGCTAAGAGTATTTCAAATACATTTTAA

Upstream 100 bases:

>100_bases
TTTCTTTTAATTGTTCACAGCACGTTCCTTTTTATTTTTAAAGTCGAGTGTTAAACTAGGAATAAATAATTTATATTGTG
TGTTGTGTGGGGTGACTAAT

Downstream 100 bases:

>100_bases
ATTTAAAAAGGTAAATCGATCGTTGATTGGCATAAAGAGATGACATTTGACGTTCGGATTTACCCTTTTTTTGTGGGGAT
TTATAGGGATGTTAAGATAT

Product: butyryl-CoA dehydrogenase-like protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPIRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCTRQFLWSTAKGYQQYKDDSQIRNSTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSISNTF

Sequences:

>Translated_384_residues
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPIRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCTRQFLWSTAKGYQQYKDDSQIRNSTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSISNTF
>Mature_384_residues
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPIRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCTRQFLWSTAKGYQQYKDDSQIRNSTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSISNTF

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=379, Percent_Identity=22.6912928759894, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI226958414, Length=320, Percent_Identity=23.125, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4501859, Length=359, Percent_Identity=22.0055710306407, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI4557233, Length=339, Percent_Identity=24.7787610619469, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538396, Length=318, Percent_Identity=25.7861635220126, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24646207, Length=347, Percent_Identity=26.2247838616715, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21355753, Length=322, Percent_Identity=24.8447204968944, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21356377, Length=341, Percent_Identity=25.2199413489736, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 42906; Mature: 42906

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPIRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEECCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCTRQFLW
EEECCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
STAKGYQQYKDDSQIRNSTSASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMR
HHHHHHHHHCCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
AGLHNPPMEDAAYTNIAKSISNTF
CCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPIRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEECCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCTRQFLW
EEECCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
STAKGYQQYKDDSQIRNSTSASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMR
HHHHHHHHHCCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
AGLHNPPMEDAAYTNIAKSISNTF
CCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]