Click here to switch to the map view.

The map label for this gene is yfmJ [H]

Identifier: 82751785

GI number: 82751785

Start: 2216116

End: 2217120

Strand: Reverse

Name: yfmJ [H]

Synonym: SAB2068c

Alternate gene names: 82751785

Gene position: 2217120-2216116 (Counterclockwise)

Preceding gene: 82751786

Following gene: 82751784

Centisome position: 80.84

GC content: 37.51

Gene sequence:

>1005_bases
ATGCAAAATAAACAAATTCTTTTTAATAAAGTACCAGAAGGCATGCCTCAAGAGGATACATTCAAAATTGAAGATATTGA
CACGCCTAAACTTGAGAGCGATGGTGTACTTGTACAAACGCTGTATATTTCAGTGGATCCATATATGAGAGGACGTATGA
CTAAGGCAGATTCGTATGTACAGCCTTTTGAAATTGGTAAACCGATTGTTAGCCATGTCGTTGCAAAAGTAATTGATTCG
ACACTCGCAGATTATAAAAAAGGAGATGTCGTTGTAGGTATGTTGCCTTGGCGAATCATTAATCATGTCCAAGCGGATCA
AATTACTAAAGTTCCAACGACAGATGTACCACTTGATTTATATTTAAGTGTTTTAGGAATGCCAGGACAAACAGCATATC
ATGGTTTGCTTGATATTGGCCAACCTAAAGACGGTGATACTGTTGTGGTTTCAGCTGCATCTGGTGCTGTAGGTTCAGTT
GTAGGTCAAATTGCTAAGATTAAAGGTTGCCGTGTTGTAGGTATTGCGGGTGGCGACAAAAAAGTAAATTATTTAACAGA
GACACTGGGCTTTGACGCTGGTATTGATTATAAGAAAGAGGATTTTGCAGAAGCGTTAGCACAAGCAGTACCAGATGGTA
TTGATGTTTATTTTGAAAATGTTGGTGGTACAGTTGGCGATGAAGTATTTAAGCATTTAAATCGTTTTGCACGTGTACCA
GTATGTGGCGCAATATCTTCATATAATCATCCTGAAGCAGATATTGGACCACGTATTCAAGGTACGCTTATTAAGAAGCA
AGTAATGATGAGAGGCTTCTTAGTAAGTGAATTCGCTAATGCTTTTAAAGAAGCTAGTGAACAGCTCGCAACATGGGTTC
AAGAAGGTAAAATTCAGTCACAAGTAACCATTGAAGATGGTTTTGAAAATGCGCCACGTGCATTTAAAAATTTATTTACT
GGCGATAACTTTGGTAAACAAGTTATTAAAGTATCGGAATTATAA

Upstream 100 bases:

>100_bases
TAAGAATGTATTTGCATACAGACATCACGAAGACACAATTCAAACTTAACGCTTAAGTAACAAATAAGTAAAAGTTTCAA
ATAAAGAAAGGTGATAAATG

Downstream 100 bases:

>100_bases
AGTATACGTTTTAACAAACCAACTTTGTTAATTGACCAAAGTTTAATAACTTTCTTATCTAAAGCAAATTTGTTCAGTAA
CATGGTATAAATAAGTCTAA

Product: quinone oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MQNKQILFNKVPEGMPQEDTFKIEDIDTPKLESDGVLVQTLYISVDPYMRGRMTKADSYVQPFEIGKPIVSHVVAKVIDS
TLADYKKGDVVVGMLPWRIINHVQADQITKVPTTDVPLDLYLSVLGMPGQTAYHGLLDIGQPKDGDTVVVSAASGAVGSV
VGQIAKIKGCRVVGIAGGDKKVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVP
VCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQSQVTIEDGFENAPRAFKNLFT
GDNFGKQVIKVSEL

Sequences:

>Translated_334_residues
MQNKQILFNKVPEGMPQEDTFKIEDIDTPKLESDGVLVQTLYISVDPYMRGRMTKADSYVQPFEIGKPIVSHVVAKVIDS
TLADYKKGDVVVGMLPWRIINHVQADQITKVPTTDVPLDLYLSVLGMPGQTAYHGLLDIGQPKDGDTVVVSAASGAVGSV
VGQIAKIKGCRVVGIAGGDKKVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVP
VCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQSQVTIEDGFENAPRAFKNLFT
GDNFGKQVIKVSEL
>Mature_334_residues
MQNKQILFNKVPEGMPQEDTFKIEDIDTPKLESDGVLVQTLYISVDPYMRGRMTKADSYVQPFEIGKPIVSHVVAKVIDS
TLADYKKGDVVVGMLPWRIINHVQADQITKVPTTDVPLDLYLSVLGMPGQTAYHGLLDIGQPKDGDTVVVSAASGAVGSV
VGQIAKIKGCRVVGIAGGDKKVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVP
VCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQSQVTIEDGFENAPRAFKNLFT
GDNFGKQVIKVSEL

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=328, Percent_Identity=40.8536585365854, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI226059133, Length=328, Percent_Identity=40.8536585365854, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI226246682, Length=345, Percent_Identity=36.5217391304348, Blast_Score=218, Evalue=9e-57,
Organism=Homo sapiens, GI226246680, Length=345, Percent_Identity=36.5217391304348, Blast_Score=218, Evalue=9e-57,
Organism=Homo sapiens, GI22748929, Length=345, Percent_Identity=36.5217391304348, Blast_Score=218, Evalue=9e-57,
Organism=Homo sapiens, GI226056130, Length=296, Percent_Identity=39.1891891891892, Blast_Score=194, Evalue=8e-50,
Organism=Homo sapiens, GI28557745, Length=325, Percent_Identity=31.3846153846154, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI226510941, Length=336, Percent_Identity=45.2380952380952, Blast_Score=301, Evalue=4e-83,
Organism=Caenorhabditis elegans, GI133901712, Length=352, Percent_Identity=35.7954545454545, Blast_Score=196, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI133901710, Length=352, Percent_Identity=35.7954545454545, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17507255, Length=255, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323504, Length=336, Percent_Identity=30.952380952381, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36401; Mature: 36401

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKQILFNKVPEGMPQEDTFKIEDIDTPKLESDGVLVQTLYISVDPYMRGRMTKADSYV
CCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECHHHHCCCCCCCCCC
QPFEIGKPIVSHVVAKVIDSTLADYKKGDVVVGMLPWRIINHVQADQITKVPTTDVPLDL
CCHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHH
YLSVLGMPGQTAYHGLLDIGQPKDGDTVVVSAASGAVGSVVGQIAKIKGCRVVGIAGGDK
HHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
KVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVP
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHCCC
VCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQS
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
QVTIEDGFENAPRAFKNLFTGDNFGKQVIKVSEL
EEEECCCCCCHHHHHHHHHCCCCCCHHHEEECCC
>Mature Secondary Structure
MQNKQILFNKVPEGMPQEDTFKIEDIDTPKLESDGVLVQTLYISVDPYMRGRMTKADSYV
CCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECHHHHCCCCCCCCCC
QPFEIGKPIVSHVVAKVIDSTLADYKKGDVVVGMLPWRIINHVQADQITKVPTTDVPLDL
CCHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHH
YLSVLGMPGQTAYHGLLDIGQPKDGDTVVVSAASGAVGSVVGQIAKIKGCRVVGIAGGDK
HHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
KVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVP
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHCCC
VCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQS
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
QVTIEDGFENAPRAFKNLFTGDNFGKQVIKVSEL
EEEECCCCCCHHHHHHHHHCCCCCCHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]