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The map label for this gene is ypdF [C]

Identifier: 82751296

GI number: 82751296

Start: 1696387

End: 1697463

Strand: Direct

Name: ypdF [C]

Synonym: SAB1567

Alternate gene names: 82751296

Gene position: 1696387-1697463 (Clockwise)

Preceding gene: 82751294

Following gene: 82751298

Centisome position: 61.85

GC content: 33.52

Gene sequence:

>1077_bases
ATGTTGAGGAGTGTTTATAAAATGACAAAAATATCAAAAATAATAGACGAACTGAACAATCAACAAGCTGATGCAGCATG
GATTACAACACCGTTGAATGTATATTATTTTACTGGATACCGTAGCGAACCCCATGAAAGATTATTTGCATTATTGATTA
AGAAAGATGGTAAACAAGTACTATTTTGTCCAAAAATGGAAGTCGAAGAAGTCAAAGCATCATCTTTCACAGGTGAAATC
GTTGGATATTTAGACACTGAAAACCCTTTTTCGCTTTATCCTCAAACAATCAATAAATTACTAATTGAAAGCGAGCACTT
AACAGTAGCACGCCAAAAACAATTAATCTCTGGTTTCAATGTCAATTCATTCGGAGATGTTGATTTAACAATCAAACAAT
TGAGAAATATTAAATCCGAAGATGAAATTAGCAAAATACGTAAAGCTGCTGAGTTAGCAGATAAGTGTATCGAAATAGGT
GTTTCTTATTTAAAAGAAGGTGTGACTGAACGTGAAGTAGTCAACCATATTGAGCAAACTATCAAACAATATGGCGTCAA
TGAAATGAGTTTTGATACGATGGTTTTATTTGGAGATCATGCCGCATCACCCCATGGCACACCAGGAGATCGCAGATTAA
AAAGCAATGAGTATGTACTATTTGATTTAGGTGTAATTTATGAGCATTATTGTAGCGATATGACACGTACCATCAAATTT
GGTGAACCTAACAAAGAAGCACAAGAAATTTATAATATTGTATTAGAAGCAGAAACATCTGCAATCCAAGCAATTAAACC
TGGAATACCATTAAAAGATATCGATCATATCGCTAGAAATATTATTTCAGAAAAAGGTTATGGTGAATATTTCCCTCATC
GCTTAGGTCATGGTCTAGGATTACAAGAACATGAATATCAAGATGTTTCAAGTACTAATTCTAATTTGTTAGAAGCTGGC
ATGGTTATTACAATCGAACCAGGTATTTATGTACCAGGTGTTGCAGGTGTAAGAATTGAAGATGACATACTTGTCACTAA
TGAAGGATACGAAGTATTAACACATTACGAAAAATAA

Upstream 100 bases:

>100_bases
GTTATAACAAATTCTCAAATTTTAAAAATTGAAAATCTAGTTAATGTATTAGCTCGATTTTGAAATCTAATAATAATTGG
CATAAAATGTAAGTAATATT

Downstream 100 bases:

>100_bases
GGAGTGGGACAAAAATGAAAAGCTTGTTACAAGCGCATTCTCATTCAGTCAAACACTGCCAATACAACATTGTAGCGCCT
AGGACATAAATTTTTGTCCA

Product: Xaa-Pro dipeptidase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLRSVYKMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASSFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Sequences:

>Translated_358_residues
MLRSVYKMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASSFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>Mature_358_residues
MLRSVYKMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASSFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=262, Percent_Identity=29.7709923664122, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI149589008, Length=381, Percent_Identity=24.6719160104987, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI260593665, Length=318, Percent_Identity=24.8427672955975, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI264681563, Length=191, Percent_Identity=33.5078534031414, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI93141226, Length=162, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40385867, Length=248, Percent_Identity=24.1935483870968, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI264681565, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1788728, Length=362, Percent_Identity=33.7016574585635, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1789275, Length=379, Percent_Identity=26.9129287598945, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790282, Length=306, Percent_Identity=25.8169934640523, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17508215, Length=422, Percent_Identity=24.4075829383886, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17509539, Length=179, Percent_Identity=33.5195530726257, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321118, Length=284, Percent_Identity=29.2253521126761, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6320922, Length=248, Percent_Identity=27.4193548387097, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322999, Length=274, Percent_Identity=26.6423357664234, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323273, Length=256, Percent_Identity=27.34375, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920384, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357079, Length=286, Percent_Identity=25.1748251748252, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40503; Mature: 40503

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVYKMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQV
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
LFCPKMEVEEVKASSFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFN
EEECCCCHHHHHHHCCCCEEEEEECCCCCCHHCHHHHHHHHHCCCHHHHHHHHHHHHCCC
VNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQT
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEC
GEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
LQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CCCCCCCCHHCCCCCHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC
>Mature Secondary Structure
MLRSVYKMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQV
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
LFCPKMEVEEVKASSFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFN
EEECCCCHHHHHHHCCCCEEEEEECCCCCCHHCHHHHHHHHHCCCHHHHHHHHHHHHCCC
VNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQT
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEC
GEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
LQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CCCCCCCCHHCCCCCHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]