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The map label for this gene is yrvN [H]

Identifier: 82751226

GI number: 82751226

Start: 1612664

End: 1613938

Strand: Direct

Name: yrvN [H]

Synonym: SAB1497

Alternate gene names: 82751226

Gene position: 1612664-1613938 (Clockwise)

Preceding gene: 82751224

Following gene: 82751254

Centisome position: 58.8

GC content: 35.76

Gene sequence:

>1275_bases
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAATTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTATCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAAGTTTACCAGAAGCTAGAATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Upstream 100 bases:

>100_bases
TAGTAGAAATTTTCATTGTATAACCTCACTTAATTCGAATATTGATATTCCCATTTTAGCATTTTTTGAGTTAAGATAGT
ATAAGAAAGGTGTGACAAAT

Downstream 100 bases:

>100_bases
AAATAAGATTAAATCGATTACCTTTGATATTTGAGCTATAGTCAAATCAAAACTGACTAGTACACGAGGCATATTCTACT
ATGCTTGCGAACTAGTCAGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Sequences:

>Translated_424_residues
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP
>Mature_423_residues
STEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDM
QFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALT
RAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMH
YDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQA
VIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYE
PKTTSKSEQQLKEIYNNLLKQRP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=33.3333333333333, Blast_Score=241, Evalue=7e-64,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=29.9319727891156, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI4506491, Length=218, Percent_Identity=27.0642201834862, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI31881687, Length=218, Percent_Identity=27.0642201834862, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI6677723, Length=310, Percent_Identity=24.5161290322581, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI194306571, Length=309, Percent_Identity=24.2718446601942, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI194306567, Length=309, Percent_Identity=24.2718446601942, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1787119, Length=405, Percent_Identity=36.0493827160494, Blast_Score=265, Evalue=5e-72,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=33.4106728538283, Blast_Score=232, Evalue=7e-62,
Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=27.3542600896861, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322528, Length=294, Percent_Identity=22.4489795918367, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19921076, Length=234, Percent_Identity=26.4957264957265, Blast_Score=72, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47315; Mature: 47184

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
CCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH
SGSTQYKFRQLNAVTNTKKDMQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDE
EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH
AAIESAERLSLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
HHHHHHHHHCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH
KQRP
HCCC
>Mature Secondary Structure 
STEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
CCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH
SGSTQYKFRQLNAVTNTKKDMQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDE
EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH
AAIESAERLSLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
HHHHHHHHHCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH
KQRP
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]