Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 82751173

GI number: 82751173

Start: 1559515

End: 1559982

Strand: Reverse

Name: ybeY [C]

Synonym: SAB1442c

Alternate gene names: 82751173

Gene position: 1559982-1559515 (Counterclockwise)

Preceding gene: 82751174

Following gene: 82751172

Centisome position: 56.88

GC content: 32.05

Gene sequence:

>468_bases
ATGTTTACGATAGATTTTAGCGATCACACAGGCTTAGTTAAAGATGCTTGGTATAAACAAATTGAAGATTTATTAGAATT
TGCTAAAAAAGAAGAGCATATAGAAGACGATGCTGAGCTTTCTGTTACATTTGTAGATAAACAAGAAATACAAGAAATTA
ATCGAACATATAGAGATAAAGATAAAGTTACAGATGTAATCTCATTTGCTTTAGAAGAAGATGAGCCAGATATTGATTTT
AGTGGTCTTGATATACCACGTGTTTTAGGGGATATAATTATCTGTACGGATGTAGCGCAAGAACAAGCAAACAATTATGG
ACATTCTTTTGAACGAGAATTAGGATTTTTAGCATTGCATGGTTTTTTGCATCTATTAGGTTATGATCATATGACTGAAG
CGGATGAAAAGGAAATGTTTGGTCGACAAGATACAATATTAAACGCATATGGATTAACACGAGACTAA

Upstream 100 bases:

>100_bases
CAACGTTAAAGGTATAAGTATATTGAAATTAGATCAGAGCGATGTAGTAAGACATCCATTGGTAAGTAAGATCATTGAAC
ATTATGAAGGAGAGAATTAA

Downstream 100 bases:

>100_bases
TTATGAAAAGGTTTAAATATGCACTTGATGGGCTGAAAATCTTAATTCAAAAAGACTATAAATTTCTTTTACATGTGTTT
GCAATGATTGTTGCTATTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD

Sequences:

>Translated_155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
>Mature_155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Homo sapiens, GI54607072, Length=115, Percent_Identity=35.6521739130435, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1786880, Length=117, Percent_Identity=35.8974358974359, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17938; Mature: 17938

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDK
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCH
DKVTDVISFALEEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALH
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
HHHHHHCCCCCCCCHHHHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDK
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCH
DKVTDVISFALEEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALH
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
HHHHHHCCCCCCCCHHHHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA