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The map label for this gene is ylmE [H]

Identifier: 82750795

GI number: 82750795

Start: 1135016

End: 1135690

Strand: Direct

Name: ylmE [H]

Synonym: SAB1052

Alternate gene names: 82750795

Gene position: 1135016-1135690 (Clockwise)

Preceding gene: 82750794

Following gene: 82750796

Centisome position: 41.39

GC content: 32.89

Gene sequence:

>675_bases
TTGCGTGTAAAAGATAATTTACAACAAATCTCAACACAAATTAATGACAAAAGTGAAAAAAATAATTTTTCAACAAAACC
AAACGTGATTGCAGTTACAAAATATGTTACAATAGAGCGAGCTAAAGAAGCGTATGAGGCTGGAATAAGACATTTTGGTG
AGAATAGATTGGAAGGCTTTTTTCAAAAGAAAGAAGCATTACCATCAGATGCGGTGATCCATTTTATAGGATCATTACAA
TCTCGAAAAGTTAAGGACGTTATAAACTACGTAGATTATTTCCATGCTTTAGATCGATTGAGCTTAGCCAAAGAAATTAA
CAAACGTGCAGAACATAAAATTAAATGTTTCTTGCAAGTGAACGTTTCGGGAGAAGCTTCTAAACATGGTATTGCTTTAG
AAGATGTTGATCAGTTTATAGATGATCTTAAAAAATATGACAAAGTCGAAATTGTAGGTTTAATGACGATGGCACCATTG
ACAGATGATGAAGCATATATTAGATCGTTATTTAAACAGTTACGTTTGAAAAAAGAAGAAATACAACGACTCAATTTAGA
ATATGCGCCTTGTGATGAATTATCAATGGGAATGAGTAATGACTATCTTATTGCAGTTGATGAAGGTGCAACGTTTGTTA
GAATTGGGACTAAACTTGTAGGAGAAGAGGAGTGA

Upstream 100 bases:

>100_bases
CTGAACATTTAGAATTATTTTTCTCTTATCGATTAGAAAAAGGTCAAACAGGACGCATGTTAGCATTCATTGGTCAACAG
TAAACAAGGAGGAGATATGC

Downstream 100 bases:

>100_bases
GCCACTTGGCTTTAAAAGATTTATTTAGTGGATTTTTTGTAATAGATGATGAAGAGGAAGTAGAAGTACCTGACAAACAA
CAACAGGTAAATGAAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINYVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGEEE

Sequences:

>Translated_224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINYVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGEEE
>Mature_224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINYVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGEEE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=218, Percent_Identity=33.0275229357798, Blast_Score=101, Evalue=5e-22,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=32.5991189427313, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=29.4117647058824, Blast_Score=88, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=193, Percent_Identity=32.6424870466321, Blast_Score=89, Evalue=5e-19,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25623; Mature: 25623

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH
FQKKEALPSDAVIHFIGSLQSRKVKDVINYVDYFHALDRLSLAKEINKRAEHKIKCFLQV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
NVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
ECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHHHHHHHHHCCCHHH
IQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGEEE
HHHHCCCCCCCCHHHCCCCCCEEEEECCCCEEEEECHHHCCCCC
>Mature Secondary Structure
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH
FQKKEALPSDAVIHFIGSLQSRKVKDVINYVDYFHALDRLSLAKEINKRAEHKIKCFLQV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
NVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
ECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHHHHHHHHHCCCHHH
IQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGEEE
HHHHCCCCCCCCHHHCCCCCCEEEEECCCCEEEEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]