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The map label for this gene is isdC

Identifier: 82750738

GI number: 82750738

Start: 1076876

End: 1077559

Strand: Direct

Name: isdC

Synonym: SAB0995

Alternate gene names: 82750738

Gene position: 1076876-1077559 (Clockwise)

Preceding gene: 82750735

Following gene: 82750739

Centisome position: 39.27

GC content: 32.46

Gene sequence:

>684_bases
TTGAAAAATATTTTAAAAGTTTTTAATACAACGATTTTAGCATTAATTATCATCATCGCGACATTCAGTAATTCTGCAAA
TGCCGCGGATAGTGGCACTTTGAATTATGAGGTTTACAAATACAATACCAATGACACGTCGATTGCTAATGACTATTTTA
ATAAACCGGCAAAGTACATTAAGAAAAATGGTAAATTGTATGTTCAAATAACTGTAAACCACAGTCATTGGATTACAGGA
ATGAGTATCGAAGGACATAAAGAAAATATTATTAGTAAAAACACTGCCAAAGATGAACGAACTTCTGAATTTGAAGTAAG
TAAGCTAAACGGTAAAGTAGATGGGAAAATTGATGTTTATATCGATGAAAAAGTGAACGGAAAACCATTCAAATATGACC
ATCATTACAATATTACATATAAATTTAATGGACCAACTGATGTAGCAGGTGCTAATGCACCAGGTAAAGATGATAAAAAT
TCTGCTTCAGGTAGTGACAAAGGATCTGATGGAGCGACCACTGGTCAAAGTGAATCTAACAGTTCGAATAAAGACAAAGT
AGAAAATCCACAAACAAATGCTGGTACACCTGCATATATATATGCAATACCAGTTGCATCCTTAGCATTATTAATCGCAA
TCACATTGTTTGTTAGAAAAAAATCTAAAGGCAATGTGGAATAA

Upstream 100 bases:

>100_bases
ATAATAAATTGATTATAAAATAAATATTGACAATGATAATCATTATTATTTATGATTTTAGTAAAGACTTAAAAGCAATC
ATAAAAAGGAGGATTATGTT

Downstream 100 bases:

>100_bases
TGAGAAATGTTAAACAAATTACTACAAAATCTATTATAGCTATTATTAGCTTAGGTATACTTACATATACAACAATGATT
GGTAGCGTGTTGGCTGATGA

Product: iron-regulated cell surface protein

Products: NA

Alternate protein names: Staphylococcal iron-regulated protein D [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITG
MSIEGHKENIISKNTAKDERTSEFEVSKLNGKVDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKN
SASGSDKGSDGATTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE

Sequences:

>Translated_227_residues
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITG
MSIEGHKENIISKNTAKDERTSEFEVSKLNGKVDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKN
SASGSDKGSDGATTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
>Mature_227_residues
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITG
MSIEGHKENIISKNTAKDERTSEFEVSKLNGKVDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKN
SASGSDKGSDGATTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE

Specific function: Involved in heme (porphyrin) scavenging. Binds hemoglobin and almost exclusively free-base protoporphyrin IX. Probably has a role as the central conduit of the isd heme uptake system, i.e., mediates the transfer of the iron-containing nutrient from isdABH

COG id: COG5386

COG function: function code M; Cell surface protein

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NEAT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019909
- InterPro:   IPR006635
- InterPro:   IPR017505 [H]

Pfam domain/function: PF05031 NEAT [H]

EC number: NA

Molecular weight: Translated: 24811; Mature: 24811

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50978 NEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCHHHHH
KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKVDGKIDVY
HCCCCEEEEEEECCCEEEEEEEECCCHHHHCCCCCCCCCCCCCEEEEECCCEECCEEEEE
IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGATTGQSESN
ECCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
CCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCHHHHH
KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKVDGKIDVY
HCCCCEEEEEEECCCEEEEEEEECCCHHHHCCCCCCCCCCCCCEEEEECCCEECCEEEEE
IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGATTGQSESN
ECCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
CCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA