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The map label for this gene is 82750627

Identifier: 82750627

GI number: 82750627

Start: 955880

End: 956389

Strand: Direct

Name: 82750627

Synonym: SAB0881

Alternate gene names: NA

Gene position: 955880-956389 (Clockwise)

Preceding gene: 82750626

Following gene: 82750630

Centisome position: 34.85

GC content: 34.31

Gene sequence:

>510_bases
ATGATTTTAGGATTAGCATTAATTCCATCAAAGTCATTTCAAGAAGCGGTGGATTCTTACCGTAAAAGATATGATAAACA
GTATTCACGAATTAAACCACATGTGACAATTAAAGCGCCATTTGAAATTGAAGATGGTGATTTAGATTCTGTCATTGAAC
AGGTTAGAGCTCGTATTAATGGTATACCAGCAGTAGAAGTTCATGCTACAAAAGCTTCTAGCTTCAAACCAACGAACAAT
GTGATTTACTTTAAAGTTGCGAAGACGGACGACTTAGAAGAATTGTTTAATCGCTTTAATGGAGAAGATTTCTATGGAGA
AGCTGAACATGTTTTTGTGCCACACTTTACAATAGCACAAGGACTATCTAGCCAAGAATTCGAAGATATTTTTGGTCAAG
TAGCATTAGCTGGGGTAGACCATAAAGAAATTATCGATGAATTAACTTTGTTACGTTTTGACGATGACGAAGATAAATGG
AAAGTTATTGAAACGTTTAAATTAGCTTAA

Upstream 100 bases:

>100_bases
TGTCGAAATTGCAAAAGATGTATAATGAATTATTTTTAATGTAACGGTTTTCAAAGAAATTTGATATAATAGCAATAGGT
TAAACAAAGGAGGAATTCAG

Downstream 100 bases:

>100_bases
GTAACATAATAGTATTGTTAATCGTAGTATGTTTGAATTAATAAGAAAATGGTCATTTTTATTGAATGTAATAAAAATGA
CCATTTTCTTTATTTTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARINGIPAVEVHATKASSFKPTNN
VIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQGLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKW
KVIETFKLA

Sequences:

>Translated_169_residues
MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARINGIPAVEVHATKASSFKPTNN
VIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQGLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKW
KVIETFKLA
>Mature_169_residues
MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARINGIPAVEVHATKASSFKPTNN
VIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQGLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKW
KVIETFKLA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1009_STAA1 (A7X0P2)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441599.1
- ProteinModelPortal:   A7X0P2
- SMR:   A7X0P2
- STRING:   A7X0P2
- EnsemblBacteria:   EBSTAT00000004331
- GeneID:   5559534
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1009
- eggNOG:   COG1514
- GeneTree:   EBGT00050000024925
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   SAUR418127:SAHV_1009-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 19327; Mature: 19327

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARIN
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCHHHHHHHHHHHHC
GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
CCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEECCHHHHH
GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCEEHHHEEECC
>Mature Secondary Structure
MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARIN
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCHHHHHHHHHHHHC
GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
CCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEECCHHHHH
GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCEEHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA