Click here to switch to the map view.

The map label for this gene is gapR

Identifier: 82750479

GI number: 82750479

Start: 799532

End: 800545

Strand: Direct

Name: gapR

Synonym: SAB0727

Alternate gene names: 82750479

Gene position: 799532-800545 (Clockwise)

Preceding gene: 82750478

Following gene: 82750480

Centisome position: 29.15

GC content: 37.67

Gene sequence:

>1014_bases
GTGAAAGACTTATTGCAAGCACAGCAAAAGCTTATACCGGATCTCATAGATAAAATGTATAAACGTTTTTCTATTCTTAC
TACTATCTCAAAAAATCAGCCTGTCGGACGTCGAAGTTTAAGCGAACATATGGATATGACTGAACGTGTACTGCGTTCTG
AAACAGATATGCTTAAGAAACAAGATTTGATAAAAGTTAAGCCTACCGGAATGGAAATTACAGCTGAAGGTGAGCAACTG
ATTTCGCAATTGAAAGGTTACTTTGATATCTATGCAGATGACAATCGTCTGTCAGAAGGTATTAAGAATAAATTTCAAAT
TAAGGAAGTTCATGTTGTTCCTGGTGATGCTGATAATAGTCAATCTGTTAAAACAGAATTAGGTAGACAAGCAGGTCAAT
TACTTGAAGGCATATTACAAGAAGATGCGATAGTTGCTGTAACTGGCGGATCCACAATGGCATGTGTTAGTGAAGCAATT
CATTTATTACCATATAATGTATTCTTCGTACCAGCCAGAGGTGGACTAGGCGAAAATGTTGTCTTTCAGGCAAACACAAT
TGCAGCCAGTATGGCACAACAAGCTGGCGGTTATTATACGACGATGTATGTACCTGATAATGTCAGCGAAACAACATATA
ACACATTGTTGCTAGAGCCATCAGTCATAAACACTTTAGACAAAATTAAACAAGCAAACGTTATATTACACGGCATTGGT
GATGCGCTGAAGATGGCGCATCGACGTCAATCACCTGAAAAGGTCATTGAACAACTTCAACATCATCAAGCTGTCGGAGA
GGCATTTGGTTATTATTTTGATACACAAGGTCAAATTGTCCATAAGGTTAAAACAATTGGACTTCAATTAGAAGACCTTG
AGTCAAAAGACTTTATTTTTGCAGTTGCAGGAGGCAAATCGAAAGGTGAAGCAATTAAAGCATACTTGACGATTGCACCC
AAGAATACAGTGTTAATCACTGATGAAGCCGCAGCAAAGATAATACTTGAATAA

Upstream 100 bases:

>100_bases
TGTAAAGAGGTTAATTTTTGTCCCGCGTGGGACTTAAAAAGGCAACCACTGGTTGTGACATATCCTTATTTACATTTATA
AATATAAGGAGGAGGTAGTA

Downstream 100 bases:

>100_bases
GAGATAAAAAGTTTAATACTTTTTAAATATCATTTTAAAGGAGGCCATTATAATGGCAGTAAAAGTAGCAATTAATGGTT
TTGGTAGAATTGGTCGTTTA

Product: glycolytic operon regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQL
ISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAI
HLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAP
KNTVLITDEAAAKIILE

Sequences:

>Translated_337_residues
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQL
ISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAI
HLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAP
KNTVLITDEAAAKIILE
>Mature_337_residues
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQL
ISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAI
HLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAP
KNTVLITDEAAAKIILE

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=261, Percent_Identity=27.9693486590038, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 37211; Mature: 37211

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
CCCEEECCCCEEEEECHHHHHHHHCCCEEEEECCHHHHHHHCCCEEEEEEEEECCCCCCC
QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCE
VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
EEEHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEEECCHHHHHHHHHHHHCEEEECCC
DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHCCEEECCCCCCEEE
AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
EEECCCCCCCEEEEEEEECCCCEEEEECCCCCEEECC
>Mature Secondary Structure
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
CCCEEECCCCEEEEECHHHHHHHHCCCEEEEECCHHHHHHHCCCEEEEEEEEECCCCCCC
QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCE
VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
EEEHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEEECCHHHHHHHHHHHHCEEEECCC
DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHCCEEECCCCCCEEE
AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
EEECCCCCCCEEEEEEEECCCCEEEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1452037 [H]