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The map label for this gene is scdA

Identifier: 82749964

GI number: 82749964

Start: 247946

End: 248620

Strand: Direct

Name: scdA

Synonym: SAB0198

Alternate gene names: 82749964

Gene position: 247946-248620 (Clockwise)

Preceding gene: 82749963

Following gene: 82749965

Centisome position: 9.04

GC content: 32.15

Gene sequence:

>675_bases
ATGATAAATAAAAATGACATAGTAGCAGATGTAGTAACTGATTATCCGAAAGCAGCGGATATTTTTAGAAGTGTGGGAAT
AGATTTTTGCTGTGGTGGACAAATAAGTATAGAAGCAGCATCCTTAGAAAAGAAAAATGTAGATTTGAACGAATTATTAC
AGCGTCTCAACGACATTGAACAAACGAATACACCAGGTTCGCTTAACCCTAAATTTTTAAATGTTTCGTCACTTATTCAA
TATATTCAAGCAGCATATCATGAACCTCTTAGAGAAGAATTTAAAAATTTAACACCTTATGTGACGAAATTATCGAAAGT
ACATGGACCTAATCATCCATATTTAGTCGAGTTAAAAGAAACATATGATACATTTAAAAATGGCATGTTAGAGCATATGC
AAAAAGAAGATGATGTTGATTTTCCAAAACTAATTAAATATGAACAAGGTGAAGTAGTAGACGATATTAATACAGTGATT
GATGATTTAGTATCTGATCACATTGCAACGGGACAATTGTTAGTGAAAATGAGCGATTTAACATCAAGCTATGAACCACC
GATAGTGGCATGTGGTACTTGGCGACTCGTTTATCAGAGATTAAAAGCACTTGAAGTGTTAACACATGAGCATGTTCATT
TAGAGAATCATGTTTTATTTAAAAAAGTATCATAA

Upstream 100 bases:

>100_bases
GGTTTTATTTTGCTGTTTATGACATGATTATGACATTTCCCTGATTTTCATTTTCAAATACATTAAATTGTATACACTGA
AAATGAGGAGGTTATCTATA

Downstream 100 bases:

>100_bases
ATAACGCGATTAGAAACTGTTGGCAAAGTAATGTCAGCAGTTTTTCGCTATACTTAACAGAAATTTAGTGACATGATAGT
CATTATTTTGAAAAGGAAAA

Product: cell wall biosynthesis protein ScdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQISIEAASLEKKNVDLNELLQRLNDIEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIVACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Sequences:

>Translated_224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQISIEAASLEKKNVDLNELLQRLNDIEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIVACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>Mature_224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQISIEAASLEKKNVDLNELLQRLNDIEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIVACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=230, Percent_Identity=27.3913043478261, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 25468; Mature: 25468

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQISIEAASLEKKNVDLNELLQRLNDIE
CCCCHHHHHHHHHCCCHHHHHHHHCCCCEEECCEEEEEHHHCCCCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
TSSYEPPIVACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQISIEAASLEKKNVDLNELLQRLNDIE
CCCCHHHHHHHHHCCCHHHHHHHHCCCCEEECCEEEEEHHHCCCCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
TSSYEPPIVACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA