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The map label for this gene is deoC1

Identifier: 82749851

GI number: 82749851

Start: 96669

End: 97331

Strand: Direct

Name: deoC1

Synonym: SAB0077

Alternate gene names: 82749851

Gene position: 96669-97331 (Clockwise)

Preceding gene: 82749850

Following gene: 82749852

Centisome position: 3.52

GC content: 39.97

Gene sequence:

>663_bases
ATGAAATTTGAGAAATATATAGATCACACTTTATTGAAGCCTGAGTCAACACGTACGCAAATCGATCAAATCATCGATGA
AGCGAAAGCATACAATTTTAAATCTGTATGTGTGAATCCAACGCATGTAAAATATGCAGCAGAGCGACTAGCTGATTCAG
AGGTGCTAGTTTGTACGGTAATAGGATTCCCATTAGGTGCGTCGACAACTGCAACGAAAGCATTTGAAACAGAAGATGCA
ATTCAAAATGGTGCAGATGAAATTGACATGGTCATCAACATCGGCGCATTAAAAGATGGACGTTTTGATGATGTACAACA
AGACATTGAAGCAGTGGTTAAAGCTGCGAAAGGTCACACAGTAAAAGTGATTATTGAGACGATATTGTTGGACCATGACG
AAATCGTAAAAGCGAGTGAATTAACAAAAGCGGCTGGTGCGGACTTCGTTAAAACTTCAACAGGTTTTGCAGGTGGCGGT
GCGACTGCAGAAGACGTTAAATTAATGAAAGATACAGTAGGTGCTGATGTAGAAGTAAAAGCATCAGGTGGTGTACGTAA
TTTAGAAGATTTCAATAAAATGGTTGAAGCAGGTGCGACACGTATTGGTGCGAGCGCAGGCGTTCAAATTATGCAAGGTT
TAGAAGCAGATTCAGATTACTAA

Upstream 100 bases:

>100_bases
GGACACAATCTGAAAAATAAATAGATATAAATTCGCGAGATATATTCGTATTTATAGTAAAATTAAATAAAGAGATTATA
TAACACGAGGAGTAGTAAGT

Downstream 100 bases:

>100_bases
TATATATAAAATTTGGGAGTGATAGCTATGACAAGACCATTTAATCGTGTACATTTAATCGTAATGGATTCAGTAGGTAT
TGGTGAAGCGCCAGACGCAG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETILLDHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Sequences:

>Translated_220_residues
MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETILLDHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
>Mature_220_residues
MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETILLDHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=217, Percent_Identity=29.9539170506912, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1790841, Length=206, Percent_Identity=35.4368932038835, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17533015, Length=207, Percent_Identity=28.5024154589372, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC1_STAAB (Q2YUU4)

Other databases:

- EMBL:   AJ938182
- RefSeq:   YP_415592.1
- ProteinModelPortal:   Q2YUU4
- SMR:   Q2YUU4
- STRING:   Q2YUU4
- EnsemblBacteria:   EBSTAT00000012544
- GeneID:   3794477
- GenomeReviews:   AJ938182_GR
- KEGG:   sab:SAB0077
- NMPDR:   fig|273036.3.peg.198
- eggNOG:   COG0274
- GeneTree:   EBGT00050000024092
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- PhylomeDB:   Q2YUU4
- ProtClustDB:   PRK00507
- BioCyc:   SAUR273036:SAB0077-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23487; Mature: 23487

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETILLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETILLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA