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The map label for this gene is ocd2 [H]

Identifier: 82749831

GI number: 82749831

Start: 72744

End: 73754

Strand: Direct

Name: ocd2 [H]

Synonym: SAB0056

Alternate gene names: 82749831

Gene position: 72744-73754 (Clockwise)

Preceding gene: 82749830

Following gene: 82749832

Centisome position: 2.65

GC content: 36.89

Gene sequence:

>1011_bases
ATGAATAGAGAGATGTTGTATTTAAATAGATCAGATATTGAACAAGTGGGAGGAAATCATTCACAAGTTTATGTGGACGC
ATTAACAGAAGCATTAACAGCGCATGCGTACAATGATTTTGTACAACCGCTTAAGCCGTATTTAAGACAGGATCCTGAAA
ATGGACACATCGCAGATCGAATTATTGCAATGCCAAGTCATATCGGTGGTGAACACGCAATTTCAGGTATTAAGTGGATA
GGTAGTAAGCACGACAATCCATCGAAACGTAATATGGAGCGTGCAAGTGGTGTCATTATTTTGAATGATCCAGAAACGAA
TTATCCAATTGCAGTTATGGAAGCAAGTTTAATTAGTAGTATGCGTACTGCAGCAGTTTCAGTGATTGCAGCTAAGCATT
TGGCTAAAAAAGGATTTAAAGACTTAACAATCATTGGATGCGGGCTAATCGGAGACAAGCAATTACAAAGTATGTTAGAG
CAATTCGATCATATTGAACGCGTGTTTGTTTACGATCAATTCTCTGAAGCATGTGCACGCTTTGTTGATAGATGGCAACA
ACAGCGTCCGGAAATTAATTTTATTGCGACAGAAAATGCTAAAGAAGCAGTATCAAATGGTGAAGTAGTCATTACATGTA
CCGTAACGGATCAACCATACATTGAATATGATTGGTTACAAAAGGGTGCATTTATTAGCAACATTTCTATTATGGATGTG
CATAAAGAAGTCTTTATTAAAGCTGACAAAGTCGTAGTAGATGACTGGTCACAATGTAATCGAGAAAAGAAAACTATTAA
CCAATTGGTGTTAGAAGGTAAATTCAGCAAAGAAGCACTTCATGCTGAACTAGGACAACTTGTGATAGGTGACATACCAG
GACGTGAAGACGATGATGAAATCATATTACTTAATCCGATGGGTATGGCTATCGAAGATATTTCAAGTGCTTACTTTATT
TATCAACAGGCACAACAACAAAATATTGGGACAACATTGAACCTATATTAA

Upstream 100 bases:

>100_bases
TTGTCACGATTTTACCAGATCGAGGCGATCGTTACTTAGATTTAGTTTATTCAGATACATGGTTAGAAAAAATGAAATCA
AGACAAGGAGTTAAATCAGA

Downstream 100 bases:

>100_bases
GAATGCGAGGTGTCTGAACATTGCAGAATCATACAGCAGTCAATACAGCACAAACGTTAATATTAAGGGATTTAGTTGAT
GCATTATTATTTGAAGATAT

Product: ornithine cyclodeaminase protein

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MNREMLYLNRSDIEQVGGNHSQVYVDALTEALTAHAYNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWI
GSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLE
QFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVIGDIPGREDDDEIILLNPMGMAIEDISSAYFI
YQQAQQQNIGTTLNLY

Sequences:

>Translated_336_residues
MNREMLYLNRSDIEQVGGNHSQVYVDALTEALTAHAYNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWI
GSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLE
QFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVIGDIPGREDDDEIILLNPMGMAIEDISSAYFI
YQQAQQQNIGTTLNLY
>Mature_336_residues
MNREMLYLNRSDIEQVGGNHSQVYVDALTEALTAHAYNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWI
GSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLE
QFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVIGDIPGREDDDEIILLNPMGMAIEDISSAYFI
YQQAQQQNIGTTLNLY

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=333, Percent_Identity=24.024024024024, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI62241008, Length=290, Percent_Identity=25.1724137931034, Blast_Score=82, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 37815; Mature: 37815

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50835 IG_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREMLYLNRSDIEQVGGNHSQVYVDALTEALTAHAYNDFVQPLKPYLRQDPENGHIADR
CCCCEEEECHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
HEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
HHHHHHHHCCCEEEEECCCHHHHHCCCCEEEEEEECCCCCEEHHHHHCCCEEECEEEEEE
HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVIGDIPGREDDDE
HHHHHEEECEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCCCC
IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure
MNREMLYLNRSDIEQVGGNHSQVYVDALTEALTAHAYNDFVQPLKPYLRQDPENGHIADR
CCCCEEEECHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
HEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
HHHHHHHHCCCEEEEECCCHHHHHCCCCEEEEEEECCCCCEEHHHHHCCCEEECEEEEEE
HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVIGDIPGREDDDE
HHHHHEEECEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCCCC
IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]