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The map label for this gene is pal [H]

Identifier: 82703826

GI number: 82703826

Start: 3114599

End: 3115126

Strand: Reverse

Name: pal [H]

Synonym: Nmul_A2713

Alternate gene names: 82703826

Gene position: 3115126-3114599 (Counterclockwise)

Preceding gene: 82703827

Following gene: 82703825

Centisome position: 97.83

GC content: 54.73

Gene sequence:

>528_bases
ATGAAAAAAGTTTTGGGCGTGTTATTGATCAGCCTGTTGACAGCATGCGCCAGCCAGACAAAGCAGCCCGGCGACGCGGA
TATGGAGGATAGAGATCGATCCAGGGATGCTGCCGCCGCGCAAAGGGAGGGCATGCAGGCTGAGGATTACACATCCCCAA
CCCTCAATCCGCTTACCGATCCCAACAGCATTCTTTCCAAGCGCAGCATCTATTTCGATTTCGACAGCTATGTAGTAAAG
GATGAATTCAGATCTCTGGTCGCGGCACATGCGAAATATCTGCGTGAGCATCCCAATGCCAGGGTGCTGCTGCAGGGAAA
TACAGACGAGCGCGGCAGTCGCGAGTATAACCTGGCGTTGGGCCAGCGTCGTGCGGACGCGGTCAAGTATGCAATGACCC
TATCAGGTGCCCAGGAGGGGCAGATTGAAGCTGTGAGCCTGGGCGAGGAAAAACCTCATGCAATGGGCCATGACGAGGCT
GCATGGGCTGAAAATCGCCGCGTGGATATCCGTTATCAGGGTGAATAA

Upstream 100 bases:

>100_bases
TTTCAACGCAGACGGGTGATATAAGAGAACCGGCGTGGGGTCCGCTACGGCGTCTGCAGTAATTCCAGTGTATTTTTGGC
TAACCTAAAAGGGAATAGAA

Downstream 100 bases:

>100_bases
TCATGCTCCAGCGCGCTTTCCTGCTATCGGTTCTGATGGTCTGTGGTTCGATTCATGCGAGAACCTTCGATGATGACAGG
GCGCCGCGCCGCATGGTCGC

Product: OmpA/MotB

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKKVLGVLLISLLTACASQTKQPGDADMEDRDRSRDAAAAQREGMQAEDYTSPTLNPLTDPNSILSKRSIYFDFDSYVVK
DEFRSLVAAHAKYLREHPNARVLLQGNTDERGSREYNLALGQRRADAVKYAMTLSGAQEGQIEAVSLGEEKPHAMGHDEA
AWAENRRVDIRYQGE

Sequences:

>Translated_175_residues
MKKVLGVLLISLLTACASQTKQPGDADMEDRDRSRDAAAAQREGMQAEDYTSPTLNPLTDPNSILSKRSIYFDFDSYVVK
DEFRSLVAAHAKYLREHPNARVLLQGNTDERGSREYNLALGQRRADAVKYAMTLSGAQEGQIEAVSLGEEKPHAMGHDEA
AWAENRRVDIRYQGE
>Mature_175_residues
MKKVLGVLLISLLTACASQTKQPGDADMEDRDRSRDAAAAQREGMQAEDYTSPTLNPLTDPNSILSKRSIYFDFDSYVVK
DEFRSLVAAHAKYLREHPNARVLLQGNTDERGSREYNLALGQRRADAVKYAMTLSGAQEGQIEAVSLGEEKPHAMGHDEA
AWAENRRVDIRYQGE

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=178, Percent_Identity=35.9550561797753, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19516; Mature: 19516

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLGVLLISLLTACASQTKQPGDADMEDRDRSRDAAAAQREGMQAEDYTSPTLNPLTD
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PNSILSKRSIYFDFDSYVVKDEFRSLVAAHAKYLREHPNARVLLQGNTDERGSREYNLAL
CHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEHHHH
GQRRADAVKYAMTLSGAQEGQIEAVSLGEEKPHAMGHDEAAWAENRRVDIRYQGE
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECCC
>Mature Secondary Structure
MKKVLGVLLISLLTACASQTKQPGDADMEDRDRSRDAAAAQREGMQAEDYTSPTLNPLTD
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PNSILSKRSIYFDFDSYVVKDEFRSLVAAHAKYLREHPNARVLLQGNTDERGSREYNLAL
CHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEHHHH
GQRRADAVKYAMTLSGAQEGQIEAVSLGEEKPHAMGHDEAAWAENRRVDIRYQGE
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]