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The map label for this gene is degU [H]

Identifier: 82703787

GI number: 82703787

Start: 3072510

End: 3073121

Strand: Reverse

Name: degU [H]

Synonym: Nmul_A2674

Alternate gene names: 82703787

Gene position: 3073121-3072510 (Counterclockwise)

Preceding gene: 82703788

Following gene: 82703786

Centisome position: 96.51

GC content: 50.82

Gene sequence:

>612_bases
GTGCGCACCCTGTCTCCGATATTCTGCTCGACCAATCTTGAATCCCTCAAGATTGAACTGGCTCGTTTAAAGCCCTCAGT
TCTTCTGCTGGATTATGACTTACCGCAATTGAATGGTCCAAGTGGAATTTCGGCGCTTATAAAATTGCACCCGGAGGCTA
AAGTGATAGTCTTGAGTCACCCCCTTCCGGACGAGGCTGAGTGGGCGTTGTTCAGAACCGGTGTCAAGGGAGTTTGCCGG
CGCGATATCGATGGAGAGCAGCTACATAGTGTGGTGACAGCAGTGCAGCGCGGTGAGCTCTGGATTCGAAGGACGCTCAG
CTGGCATCTGCTGAATGAGCTTGTTACGATCACCCAGGAAAAGACCAAAATCAAACAGGCGGTTGGAGAACTGCTTGCCA
ATTTGACTCAACGTGAATATGAAATTGCAACGCTTGTGGGAAACGGTGAATCGAACAAGCAGATTGTCCGCCGGCTGGAT
ATTACGGAGCGCACGGTAAAAGCTCACCTGACGGAAGTCTTTCGCAAGCTGGATATTGCCGACCGACTCAAGTTGGCTTT
GATTGTCAAAGGATCCATCTACCCCGGGGACTCCTCGAAAATGAGCCATTGA

Upstream 100 bases:

>100_bases
GGACAGAGTGCTGCACTGATGACTCGTTTTTTTCCGGGAGAACTTCTTGATCCTGCTGGCTAGCGCTTCTCAGGACGATC
TGTATCATTGGGAGCACGGG

Downstream 100 bases:

>100_bases
GTGTTTCGCATCCGCCAGGTTTCCTGACACCGCGGCGCCTTTTTCAGCATGAAACCTTGGAAAACGCGCTAGCGTATTCA
AAAAAGATTTTGCTCAATAG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protease production enhancer protein [H]

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MRTLSPIFCSTNLESLKIELARLKPSVLLLDYDLPQLNGPSGISALIKLHPEAKVIVLSHPLPDEAEWALFRTGVKGVCR
RDIDGEQLHSVVTAVQRGELWIRRTLSWHLLNELVTITQEKTKIKQAVGELLANLTQREYEIATLVGNGESNKQIVRRLD
ITERTVKAHLTEVFRKLDIADRLKLALIVKGSIYPGDSSKMSH

Sequences:

>Translated_203_residues
MRTLSPIFCSTNLESLKIELARLKPSVLLLDYDLPQLNGPSGISALIKLHPEAKVIVLSHPLPDEAEWALFRTGVKGVCR
RDIDGEQLHSVVTAVQRGELWIRRTLSWHLLNELVTITQEKTKIKQAVGELLANLTQREYEIATLVGNGESNKQIVRRLD
ITERTVKAHLTEVFRKLDIADRLKLALIVKGSIYPGDSSKMSH
>Mature_203_residues
MRTLSPIFCSTNLESLKIELARLKPSVLLLDYDLPQLNGPSGISALIKLHPEAKVIVLSHPLPDEAEWALFRTGVKGVCR
RDIDGEQLHSVVTAVQRGELWIRRTLSWHLLNELVTITQEKTKIKQAVGELLANLTQREYEIATLVGNGESNKQIVRRLD
ITERTVKAHLTEVFRKLDIADRLKLALIVKGSIYPGDSSKMSH

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=167, Percent_Identity=28.7425149700599, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22818; Mature: 22818

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLSPIFCSTNLESLKIELARLKPSVLLLDYDLPQLNGPSGISALIKLHPEAKVIVLSH
CCCCCCEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHEEHEEECCCCEEEEEEC
PLPDEAEWALFRTGVKGVCRRDIDGEQLHSVVTAVQRGELWIRRTLSWHLLNELVTITQE
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KTKIKQAVGELLANLTQREYEIATLVGNGESNKQIVRRLDITERTVKAHLTEVFRKLDIA
HHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
DRLKLALIVKGSIYPGDSSKMSH
HHEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRTLSPIFCSTNLESLKIELARLKPSVLLLDYDLPQLNGPSGISALIKLHPEAKVIVLSH
CCCCCCEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHEEHEEECCCCEEEEEEC
PLPDEAEWALFRTGVKGVCRRDIDGEQLHSVVTAVQRGELWIRRTLSWHLLNELVTITQE
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KTKIKQAVGELLANLTQREYEIATLVGNGESNKQIVRRLDITERTVKAHLTEVFRKLDIA
HHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
DRLKLALIVKGSIYPGDSSKMSH
HHEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3136143; 3141378; 3141377; 9384377 [H]