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The map label for this gene is ypmQ [H]

Identifier: 82703778

GI number: 82703778

Start: 3058319

End: 3058933

Strand: Reverse

Name: ypmQ [H]

Synonym: Nmul_A2665

Alternate gene names: 82703778

Gene position: 3058933-3058319 (Counterclockwise)

Preceding gene: 82703779

Following gene: 82703777

Centisome position: 96.06

GC content: 53.98

Gene sequence:

>615_bases
ATGAGCCTGGCAAAACGCAGCGTACTTATTTCAGCGCTGGTGACTTCGCTGGGCACATGGGTTTTTTGGTGGGGTACTGA
CGGGTTCACGGCATTTACGGCCGAAACGGCAAGGCGCGTGGAAATACTTCGCTCTCCGCGTGCGCTGCCGGATGTTACAC
TTGAAGATCAGAACGGAAAAATCTTTCACCTGAAAGATTACCAGGGCAAGTTGCTTGCGGTAGACTTCATCTTCACGCGC
TGCACCACCTTGTGTCGGAGCATGGGCATGATCTTCAAGCAGATTCGGGACCTGATACCAGAGGAGTCGTTAGGGCGCGA
TTTTGCCCTGCTTAGCATCAGCTTTGATCCTGAACACGACGATCCCGCCAGTTTGAAGAAGTATGGCGAAGCCTATGGCG
CTGACGGCGAGATCTGGCGTATCGCAAGAGTACGCGACAAGGCGGAGCTTCAATCGCTGCTGGATGCCTTTGGCATTATC
GTGATACCGGACCAGTTTGGCGGATTCGAGCATAACACCGCTCTTCATCTCGTCGGGCGGGATGGAAGACTCAGGCTGAT
CAGCGATATCGATAAAGCGGTCCCATTCGCCGAGCAAGTCGTAGCGTTGCTATGA

Upstream 100 bases:

>100_bases
TCTTACGCGGTTGGGGCTGGCGAGTCGCGATTATCAACGCGCCTCTCTTGCGCGAAGTATGGCTACATGACACCTACATG
GTAAGGGCGTGATATAACCC

Downstream 100 bases:

>100_bases
TTGGAGCCCTATCTCATTATTCCGGCAGAAGCGCGCTTGCGCTTGGAGTGTTCTACCTGCTCCTTGCCACACCTATTGCA
CGAGACTGGCTGGAAGCTTC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSLAKRSVLISALVTSLGTWVFWWGTDGFTAFTAETARRVEILRSPRALPDVTLEDQNGKIFHLKDYQGKLLAVDFIFTR
CTTLCRSMGMIFKQIRDLIPEESLGRDFALLSISFDPEHDDPASLKKYGEAYGADGEIWRIARVRDKAELQSLLDAFGII
VIPDQFGGFEHNTALHLVGRDGRLRLISDIDKAVPFAEQVVALL

Sequences:

>Translated_204_residues
MSLAKRSVLISALVTSLGTWVFWWGTDGFTAFTAETARRVEILRSPRALPDVTLEDQNGKIFHLKDYQGKLLAVDFIFTR
CTTLCRSMGMIFKQIRDLIPEESLGRDFALLSISFDPEHDDPASLKKYGEAYGADGEIWRIARVRDKAELQSLLDAFGII
VIPDQFGGFEHNTALHLVGRDGRLRLISDIDKAVPFAEQVVALL
>Mature_203_residues
SLAKRSVLISALVTSLGTWVFWWGTDGFTAFTAETARRVEILRSPRALPDVTLEDQNGKIFHLKDYQGKLLAVDFIFTRC
TTLCRSMGMIFKQIRDLIPEESLGRDFALLSISFDPEHDDPASLKKYGEAYGADGEIWRIARVRDKAELQSLLDAFGIIV
IPDQFGGFEHNTALHLVGRDGRLRLISDIDKAVPFAEQVVALL

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22873; Mature: 22741

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAKRSVLISALVTSLGTWVFWWGTDGFTAFTAETARRVEILRSPRALPDVTLEDQNGK
CCCHHHHHHHHHHHHHHCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEEECCCCC
IFHLKDYQGKLLAVDFIFTRCTTLCRSMGMIFKQIRDLIPEESLGRDFALLSISFDPEHD
EEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC
DPASLKKYGEAYGADGEIWRIARVRDKAELQSLLDAFGIIVIPDQFGGFEHNTALHLVGR
CHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECC
DGRLRLISDIDKAVPFAEQVVALL
CCCEEHHHHHHHHCCHHHHHHHHC
>Mature Secondary Structure 
SLAKRSVLISALVTSLGTWVFWWGTDGFTAFTAETARRVEILRSPRALPDVTLEDQNGK
CCHHHHHHHHHHHHHHCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEEECCCCC
IFHLKDYQGKLLAVDFIFTRCTTLCRSMGMIFKQIRDLIPEESLGRDFALLSISFDPEHD
EEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC
DPASLKKYGEAYGADGEIWRIARVRDKAELQSLLDAFGIIVIPDQFGGFEHNTALHLVGR
CHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECC
DGRLRLISDIDKAVPFAEQVVALL
CCCEEHHHHHHHHCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]