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The map label for this gene is csgD [C]

Identifier: 82703694

GI number: 82703694

Start: 2965417

End: 2966190

Strand: Reverse

Name: csgD [C]

Synonym: Nmul_A2579

Alternate gene names: 82703694

Gene position: 2966190-2965417 (Counterclockwise)

Preceding gene: 82703695

Following gene: 82703693

Centisome position: 93.15

GC content: 51.16

Gene sequence:

>774_bases
ATGATGGGGGGAGAGTTTACGCTGACGGAGCGGGAGGCGGAATACCTGTTCCGGATTATCGATTCATCAATCAATATATT
TCGGCGTCATCAGTTTTTCTTGTGGGCGCAGGGGGAACTGCAGGGCCTTCTGCCGCATGGCATGCTCATATGCCTGTTCG
ATGAAGGCAATGGGCAGGCTGTGAATATCGAAAGATTCAGTCGCACAGATATGGACGAAATCCGGTTTTCAGAACTTTGC
CGTCCCGATGGGGGAATTGTATTTCGCGCCATGTCCGCATGGAGCGCGGGCAAAAACCAGCCGCTTCTGGTTTGTCCAAA
TAATTCGCATACGCCCACCTACAAGCGTTTTTCTAACGACCTCAAGCGTGAAAATCTCCAGCGTATCGCGGCGCACGGAA
TGTTCGACACCAATGGCCGAACCACCTGCTTCTTTACCTTTACCCAGATTTCCGCCGCATTGAGCGAGCGTCATGCTTAT
TTCCTCGAGCTGCTGATGCCGCACATGCATATGGCGCTGGTACGTATGCTGTTTCATGAACGCCATCATAAGCAGGGTGC
CGTGGGGGAAAGAAGCAGAAAACTCATCACGGACCGCGAGACGGAAATTTTGCGCCATGTTCAGGCGGGAAAGAGCAATC
ATGAAATAGCCCAGTTACTTTACATCAGTCCGCTTACTGTCAAAAACCACATTCAGAAAATCCTGAAAAAGCTGGATGTC
AATAATCGGGCTCACGCCGTGGCCAAGGCGATGGCGTTGAAGATCACGCTTTGA

Upstream 100 bases:

>100_bases
CAGTCATATCCTGCCACGAAAATACGCACTCGCGCAAATCGAATAATATCGGGAAGACCGTTGCAGTCCGAGAACGATAT
GAATAATCAGGGCATAAGGA

Downstream 100 bases:

>100_bases
GTTTCCGGGGCAGATCCCCTCGACCCTGAGGCCGCGCCTTGGATTCTTCCCTCTATCCGCAGTGACTCCTACGAGGCGTC
CTTGTACCCATGAAAAGCGT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Activator Protein; Response Regulator Receiver Protein

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMGGEFTLTEREAEYLFRIIDSSINIFRRHQFFLWAQGELQGLLPHGMLICLFDEGNGQAVNIERFSRTDMDEIRFSELC
RPDGGIVFRAMSAWSAGKNQPLLVCPNNSHTPTYKRFSNDLKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAY
FLELLMPHMHMALVRMLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDV
NNRAHAVAKAMALKITL

Sequences:

>Translated_257_residues
MMGGEFTLTEREAEYLFRIIDSSINIFRRHQFFLWAQGELQGLLPHGMLICLFDEGNGQAVNIERFSRTDMDEIRFSELC
RPDGGIVFRAMSAWSAGKNQPLLVCPNNSHTPTYKRFSNDLKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAY
FLELLMPHMHMALVRMLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDV
NNRAHAVAKAMALKITL
>Mature_257_residues
MMGGEFTLTEREAEYLFRIIDSSINIFRRHQFFLWAQGELQGLLPHGMLICLFDEGNGQAVNIERFSRTDMDEIRFSELC
RPDGGIVFRAMSAWSAGKNQPLLVCPNNSHTPTYKRFSNDLKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAY
FLELLMPHMHMALVRMLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDV
NNRAHAVAKAMALKITL

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29605; Mature: 29605

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGGEFTLTEREAEYLFRIIDSSINIFRRHQFFLWAQGELQGLLPHGMLICLFDEGNGQA
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCCCCE
VNIERFSRTDMDEIRFSELCRPDGGIVFRAMSAWSAGKNQPLLVCPNNSHTPTYKRFSND
EEEHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCEEEECCCCCCCHHHHHHHH
LKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVRMLFHE
HHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDV
HHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHEECCCHHHHHHHHHHHHHCC
NNRAHAVAKAMALKITL
CCHHHHHHHHHEEEEEC
>Mature Secondary Structure
MMGGEFTLTEREAEYLFRIIDSSINIFRRHQFFLWAQGELQGLLPHGMLICLFDEGNGQA
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCCCCE
VNIERFSRTDMDEIRFSELCRPDGGIVFRAMSAWSAGKNQPLLVCPNNSHTPTYKRFSND
EEEHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCEEEECCCCCCCHHHHHHHH
LKRENLQRIAAHGMFDTNGRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVRMLFHE
HHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDV
HHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHEECCCHHHHHHHHHHHHHCC
NNRAHAVAKAMALKITL
CCHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA