Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 82703601

GI number: 82703601

Start: 2840623

End: 2841540

Strand: Reverse

Name: yebA [H]

Synonym: Nmul_A2486

Alternate gene names: 82703601

Gene position: 2841540-2840623 (Counterclockwise)

Preceding gene: 82703603

Following gene: 82703600

Centisome position: 89.24

GC content: 51.96

Gene sequence:

>918_bases
ATGAATATTATTCTAATTTCCAATAATTCGGCAAAAGCAAAAACCCTGACTCTAACCGCTAAACATCTTACGCTCGTGGT
TTTAGGGTTCCTTTTTGCTTCCATGCTGATGGCGATGGTACTCAACTATATATCCCTGCGCTATGCAGACAAGATCGACA
GTCCTACATTGCGATCACTAGTTTTAAGTGCACAGCAGGAGGAGCAACAGAAAACGCAGTCCTATCTGCGGGACAGCCTC
AATGCCATGGCGATCAAGATGGGCCAGATGCAGGCCCAGCTGCTGCGACTCGATTCCGTTGGCGTGCGACTGGCAGAGCT
GGCCGGCATGAAGCCGCAGGAATACCTGTTCAACCAGAATCCCGGGCAGGGAGGAACCTTGTCTACACAGCAATTACAGG
ATATCTCATTTACCGAATTCAACAGCCAGATACAGGAGCTGGCACGGACGCTGGATGATCGCACCGACAAGCTCGATGCC
CTGGATTCATTGCTGATGCAGGACAGGCTCAGGAAGAAGTTTCTTCCATCGGCAATGCCGGTAGAGGGAAAGGCATACTC
CTCCGGTTTCGGCCTGCGTATCGATCCTTTTTCCGGAAAGCGTCATTTTCATGAAGGTATCGATTTCATCATGCCTGCCG
GATCGCCCATTCTCTCAGCGGCGGGGGGCGTGGTAGTGTATTCCGATTATCATCCTGAGTATGGTAATATGATTGATGTT
GACCACGGCAATGACTTTGTCAGCCGCTATGCTCATGCCTCCAAGCGCTTGGTGAAGGTGGGCCAAGTGGTGGTTCGTGG
ACAGAAGATTGCGGAAGTGGGCAGCACAGGCCGCTCTACCGGTCCGCATCTTCACTTTGAAGTCAGGCATAGGGGCTCGC
CCCAAAATCCGTCACGGTTCCTGAAGATGCCGGGTTGA

Upstream 100 bases:

>100_bases
GTGATTGAATAACCGCTGATGCTCGGGCGTCAGCCTCAGGGTCCCAAGGTAGAAATCGATCTTGCGGGCAGTCATGGCTG
AATCACGATTAGGGGAGAAG

Downstream 100 bases:

>100_bases
GCCGGGATAAATACTTTGCAGTGGGGGGTGAGGCCGAAAAAACCTCACCCCCTATTTTTTTGACGATCGCTTAATAGAAA
TAGAATTTTCATGCTCAACA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNIILISNNSAKAKTLTLTAKHLTLVVLGFLFASMLMAMVLNYISLRYADKIDSPTLRSLVLSAQQEEQQKTQSYLRDSL
NAMAIKMGQMQAQLLRLDSVGVRLAELAGMKPQEYLFNQNPGQGGTLSTQQLQDISFTEFNSQIQELARTLDDRTDKLDA
LDSLLMQDRLRKKFLPSAMPVEGKAYSSGFGLRIDPFSGKRHFHEGIDFIMPAGSPILSAAGGVVVYSDYHPEYGNMIDV
DHGNDFVSRYAHASKRLVKVGQVVVRGQKIAEVGSTGRSTGPHLHFEVRHRGSPQNPSRFLKMPG

Sequences:

>Translated_305_residues
MNIILISNNSAKAKTLTLTAKHLTLVVLGFLFASMLMAMVLNYISLRYADKIDSPTLRSLVLSAQQEEQQKTQSYLRDSL
NAMAIKMGQMQAQLLRLDSVGVRLAELAGMKPQEYLFNQNPGQGGTLSTQQLQDISFTEFNSQIQELARTLDDRTDKLDA
LDSLLMQDRLRKKFLPSAMPVEGKAYSSGFGLRIDPFSGKRHFHEGIDFIMPAGSPILSAAGGVVVYSDYHPEYGNMIDV
DHGNDFVSRYAHASKRLVKVGQVVVRGQKIAEVGSTGRSTGPHLHFEVRHRGSPQNPSRFLKMPG
>Mature_305_residues
MNIILISNNSAKAKTLTLTAKHLTLVVLGFLFASMLMAMVLNYISLRYADKIDSPTLRSLVLSAQQEEQQKTQSYLRDSL
NAMAIKMGQMQAQLLRLDSVGVRLAELAGMKPQEYLFNQNPGQGGTLSTQQLQDISFTEFNSQIQELARTLDDRTDKLDA
LDSLLMQDRLRKKFLPSAMPVEGKAYSSGFGLRIDPFSGKRHFHEGIDFIMPAGSPILSAAGGVVVYSDYHPEYGNMIDV
DHGNDFVSRYAHASKRLVKVGQVVVRGQKIAEVGSTGRSTGPHLHFEVRHRGSPQNPSRFLKMPG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=105, Percent_Identity=45.7142857142857, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789099, Length=124, Percent_Identity=40.3225806451613, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=41.0714285714286, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082297, Length=88, Percent_Identity=38.6363636363636, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33799; Mature: 33799

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIILISNNSAKAKTLTLTAKHLTLVVLGFLFASMLMAMVLNYISLRYADKIDSPTLRSL
CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VLSAQQEEQQKTQSYLRDSLNAMAIKMGQMQAQLLRLDSVGVRLAELAGMKPQEYLFNQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
PGQGGTLSTQQLQDISFTEFNSQIQELARTLDDRTDKLDALDSLLMQDRLRKKFLPSAMP
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VEGKAYSSGFGLRIDPFSGKRHFHEGIDFIMPAGSPILSAAGGVVVYSDYHPEYGNMIDV
CCCCCCCCCCCEEECCCCCCHHHHCCCCEEECCCCHHHHCCCCEEEEECCCCCCCCEEEE
DHGNDFVSRYAHASKRLVKVGQVVVRGQKIAEVGSTGRSTGPHLHFEVRHRGSPQNPSRF
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHH
LKMPG
CCCCC
>Mature Secondary Structure
MNIILISNNSAKAKTLTLTAKHLTLVVLGFLFASMLMAMVLNYISLRYADKIDSPTLRSL
CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VLSAQQEEQQKTQSYLRDSLNAMAIKMGQMQAQLLRLDSVGVRLAELAGMKPQEYLFNQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
PGQGGTLSTQQLQDISFTEFNSQIQELARTLDDRTDKLDALDSLLMQDRLRKKFLPSAMP
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VEGKAYSSGFGLRIDPFSGKRHFHEGIDFIMPAGSPILSAAGGVVVYSDYHPEYGNMIDV
CCCCCCCCCCCEEECCCCCCHHHHCCCCEEECCCCHHHHCCCCEEEEECCCCCCCCEEEE
DHGNDFVSRYAHASKRLVKVGQVVVRGQKIAEVGSTGRSTGPHLHFEVRHRGSPQNPSRF
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHH
LKMPG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]