Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 82703594

GI number: 82703594

Start: 2831332

End: 2831787

Strand: Direct

Name: yqgF [C]

Synonym: Nmul_A2479

Alternate gene names: 82703594

Gene position: 2831332-2831787 (Clockwise)

Preceding gene: 82703593

Following gene: 82703595

Centisome position: 88.92

GC content: 53.29

Gene sequence:

>456_bases
ATGGAGGAGGCTGAAAAAGCGAGTCAGCCACACGCCGGCACGGCATTGGCCTTCGATTTCGGCGAAAAACGAATCGGGGT
CGCGATCGGGAACCTGGAATTGGGATTGGCCCATCCTCTTGTTACCCTATCCAACAAGAATAAGGAGGAATGCTTGAAAA
GCATCGCTCGGCTAATGGATGAATGGAAACCAGTTTTACTGGTGGTTGGACTGCCGGTTCATGCGGATGGTACAGAGCAC
GAGCTTACCCGTCGAAGTCGCCGCTTCGCGCATCGTCTTCAGGCCCGGTTTGGTATTCGCACTGTCCTGGAGGATGAGCG
TTATACTTCGATCAGCGCCAGTTCAGCACTGGACGAAGCGAGTGTCAGGGGCAGGAGGCAGAAACAGGTGCTGGATCAGA
TCGCGGCTCAGCTGATATTGCAATCTTATTTTGACCAACGAAATGCAACTACCTGA

Upstream 100 bases:

>100_bases
CTGTCGGATGAAGTGGGTCATGCCTGAAGGTATCGCTCATTCGACGAGGGAGCAATACTCAGTCCATTACAGGCAGAGCT
GACGGATTGGCAATACCGAT

Downstream 100 bases:

>100_bases
AGCGGAAGACCTGCTGGCTGTGCTGACTGCCCGGATACGGCAAGGCATTTCCGCTGATACCGCAGTCGTAGGAATTCATA
CCGGCGGAGTATGGCTTGCG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMDEWKPVLLVVGLPVHADGTEH
ELTRRSRRFAHRLQARFGIRTVLEDERYTSISASSALDEASVRGRRQKQVLDQIAAQLILQSYFDQRNATT

Sequences:

>Translated_151_residues
MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMDEWKPVLLVVGLPVHADGTEH
ELTRRSRRFAHRLQARFGIRTVLEDERYTSISASSALDEASVRGRRQKQVLDQIAAQLILQSYFDQRNATT
>Mature_151_residues
MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMDEWKPVLLVVGLPVHADGTEH
ELTRRSRRFAHRLQARFGIRTVLEDERYTSISASSALDEASVRGRRQKQVLDQIAAQLILQSYFDQRNATT

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=43.7037037037037, Blast_Score=117, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NITMU (Q2Y653)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_413160.1
- ProteinModelPortal:   Q2Y653
- SMR:   Q2Y653
- STRING:   Q2Y653
- GeneID:   3784828
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A2479
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q2Y653
- ProtClustDB:   PRK00109
- BioCyc:   NMUL323848:NMUL_A2479-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16878; Mature: 16878

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD
CCCCHHCCCCCCCEEEEEECCCCEEEEEECCEEECHHCCEEEECCCCHHHHHHHHHHHHH
EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQARFGIRTVLEDERYTSISASSALDEA
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SVRGRRQKQVLDQIAAQLILQSYFDQRNATT
HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD
CCCCHHCCCCCCCEEEEEECCCCEEEEEECCEEECHHCCEEEECCCCHHHHHHHHHHHHH
EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQARFGIRTVLEDERYTSISASSALDEA
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SVRGRRQKQVLDQIAAQLILQSYFDQRNATT
HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA