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The map label for this gene is ygaF [H]

Identifier: 82702925

GI number: 82702925

Start: 2060638

End: 2061165

Strand: Direct

Name: ygaF [H]

Synonym: Nmul_A1802

Alternate gene names: 82702925

Gene position: 2060638-2061165 (Clockwise)

Preceding gene: 82702922

Following gene: 82702929

Centisome position: 64.71

GC content: 49.81

Gene sequence:

>528_bases
ATGAAAGTACTGGGAGTACTTGCAACGTTAGCGACACTTATCATGACTTTTGGAAGTCGTGGCGTACTTGCCGAGCCTCT
CAAGGTGGGAGAGGCAGCACCGGATTTCAATCTTCCCGATCAAAATGGCAAAAACCACAAGCTCTCGGATTACCACGGCA
AATGGCTGGCATTGTATTTCTATGTCAAGGACGATACACCCGGGTGCACCAAGCAGGCGTGTAAATTCCGTGATGACATT
CACCAATTGAGGGATCTGGGCGCGGAAGTTGTCGGTGTAAGCGTGGACGATAGCGCAAGCCATGCCAGCTTTGCCAAAAA
GTATGATCTTCCCTTTCCGCTTTTGGCGGACAGCAAAGGCGAGACTGCCAAGCGTTACGACTCGATATGGAGCCTCATCG
GCCTGGCCAAACGCAATACCTACCTCATTGACCCGGAAGGCAGGATCGCTAAAATTTATTTATCAGCCAGCGCTTCGCGC
AATTCTGCTGAAATAATCGAGGATTTGAAAAGAATGAAGGGTTCCTAG

Upstream 100 bases:

>100_bases
TGAAAAGAGAAGACCTGGTATGAGCACAAGTGTTTCAACCCATACAGAAACCTCGTGCGATGCCAAATCGCTACATCGAT
TTGAATATCAAGGAGAAATC

Downstream 100 bases:

>100_bases
TTGCATTGCCAAAGATTTGAAGTGAATCCCGAAATGTGAAGCCTTCTCAGATCCTTGTGACGGAAACCGGGAATCATGTC
AGCCTATCTGAGATAAAGTA

Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKVLGVLATLATLIMTFGSRGVLAEPLKVGEAAPDFNLPDQNGKNHKLSDYHGKWLALYFYVKDDTPGCTKQACKFRDDI
HQLRDLGAEVVGVSVDDSASHASFAKKYDLPFPLLADSKGETAKRYDSIWSLIGLAKRNTYLIDPEGRIAKIYLSASASR
NSAEIIEDLKRMKGS

Sequences:

>Translated_175_residues
MKVLGVLATLATLIMTFGSRGVLAEPLKVGEAAPDFNLPDQNGKNHKLSDYHGKWLALYFYVKDDTPGCTKQACKFRDDI
HQLRDLGAEVVGVSVDDSASHASFAKKYDLPFPLLADSKGETAKRYDSIWSLIGLAKRNTYLIDPEGRIAKIYLSASASR
NSAEIIEDLKRMKGS
>Mature_175_residues
MKVLGVLATLATLIMTFGSRGVLAEPLKVGEAAPDFNLPDQNGKNHKLSDYHGKWLALYFYVKDDTPGCTKQACKFRDDI
HQLRDLGAEVVGVSVDDSASHASFAKKYDLPFPLLADSKGETAKRYDSIWSLIGLAKRNTYLIDPEGRIAKIYLSASASR
NSAEIIEDLKRMKGS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=138, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4505591, Length=139, Percent_Identity=28.7769784172662, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI32455266, Length=139, Percent_Identity=28.7769784172662, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI32455264, Length=139, Percent_Identity=28.7769784172662, Blast_Score=67, Evalue=7e-12,
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=35.9477124183007, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1786822, Length=144, Percent_Identity=25.6944444444444, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17554494, Length=155, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322180, Length=156, Percent_Identity=29.4871794871795, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17738015, Length=131, Percent_Identity=34.3511450381679, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 19251; Mature: 19251

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGVLATLATLIMTFGSRGVLAEPLKVGEAAPDFNLPDQNGKNHKLSDYHGKWLALYF
CHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YVKDDTPGCTKQACKFRDDIHQLRDLGAEVVGVSVDDSASHASFAKKYDLPFPLLADSKG
EEECCCCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHCCCCCCEEECCCC
ETAKRYDSIWSLIGLAKRNTYLIDPEGRIAKIYLSASASRNSAEIIEDLKRMKGS
CHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVLGVLATLATLIMTFGSRGVLAEPLKVGEAAPDFNLPDQNGKNHKLSDYHGKWLALYF
CHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YVKDDTPGCTKQACKFRDDIHQLRDLGAEVVGVSVDDSASHASFAKKYDLPFPLLADSKG
EEECCCCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHCCCCCCEEECCCC
ETAKRYDSIWSLIGLAKRNTYLIDPEGRIAKIYLSASASRNSAEIIEDLKRMKGS
CHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]