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The map label for this gene is ybdK [C]

Identifier: 82702677

GI number: 82702677

Start: 1773522

End: 1774637

Strand: Direct

Name: ybdK [C]

Synonym: Nmul_A1548

Alternate gene names: 82702677

Gene position: 1773522-1774637 (Clockwise)

Preceding gene: 82702676

Following gene: 82702678

Centisome position: 55.7

GC content: 54.3

Gene sequence:

>1116_bases
ATGAGCCTGATGCCCTTCGCGCCCTCCCGTCCCCTGAGCATAGGAGTGGAGCTTGAACTGCAATTGCTCGGATGCAACGA
TTACAACCTCGCCCCTTCTGCACCCGAGATTTTGCGTCGCGTAGCAAAGCGCACTCATCCCGGGGAAATCAAACCGGAGA
TGACGCGCAGTATGATAGAGATCAACACCTCGGTGCAGCAGGAGTATGCCGGACTGGTGACGGAACTCCGTGCCCTGCGG
GACGTTGTTTCCGAGGCCGGATGTTTTCTCAACGTAGCTGTTGCAGGCGGAGGCACCCACCCGTTCCAGCATTGGAGCGA
GCAGAAGATTTTCGATGCGCCGCGCTTTCATTACCTCTCGGAGCTGTACGGCTACCTCGCAAAACAATTCACGATATTCG
GACAGCACGTGCACATCGGCTGTCCCGGGCCGGACGAAGCGCTCCATCTGACGCACATGCTCTCGCGCTACATTCCGCAT
TTTATTGCTCTGTCGGCCAGTTCGCCGTTTGTGCAGGGGCATGATACCGGCTTTGCCTCTGCCCGATTGAACTCCGTTTT
TTCCTTCCCATTAAGTGGGCGAGCTCCCTTCGTATTGCGCTGGAACGATTTCGAAAAATTTTTCGCCAAGATGACGGGAA
CTGGAGTGGTCGAATCCATGAAAGATTTTTACTGGGATATAAGGCCAAAGCCCGAGTTCGGTACCATCGAGGTGAGGGTA
TGCGACACGCCCCTTACAGTCGAGATTGCAGCCTCCATTGCCTGCTATATTCAGGCAATGTCCAGATACATCATGGTGGA
GCAGCGTATGGCGCCCGAAGAGGATGACTATCTGGTGTATACGTTCAACCGCTTCCAGGCATGCCGCTTTGGCCTGGAAG
GTGTCTTTATCGATCCTCGTACCCATCAGCAACGTAGTATCCGGGAAGATATAATGGAGATGCTTGAACACATTTCCGAC
CATGCAAGAGAACTGCACGCGGTGGAAGCGATGGAACGAATCCGCGAGATACTCATCGTCGGTAACGGCACAAGTTGGCA
GCGCAGGGCTTATGCAAGCGAGCACAACCTTGCCGACGTCATGCAGTTGCAAGCCGAATTATGGATGGGAAACTGA

Upstream 100 bases:

>100_bases
GAATGGTGCTGATGAGCTGGATCGTCATACTTGAATTGATCGGACCTGTTCTGGTGCAAGTTGCCCTGCGAAGAGCCGGA
GAAACACCGGAAAAAAAAAC

Downstream 100 bases:

>100_bases
TTCCCGTGAGGAATGTCTAAATTGTCGGTTAGATATGGATCGCTGAGAAAAACCAGCGGAACAAAGTAGCGCAACGTCGG
CTCGATTGCCCCCGGGCAAA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLMPFAPSRPLSIGVELELQLLGCNDYNLAPSAPEILRRVAKRTHPGEIKPEMTRSMIEINTSVQQEYAGLVTELRALR
DVVSEAGCFLNVAVAGGGTHPFQHWSEQKIFDAPRFHYLSELYGYLAKQFTIFGQHVHIGCPGPDEALHLTHMLSRYIPH
FIALSASSPFVQGHDTGFASARLNSVFSFPLSGRAPFVLRWNDFEKFFAKMTGTGVVESMKDFYWDIRPKPEFGTIEVRV
CDTPLTVEIAASIACYIQAMSRYIMVEQRMAPEEDDYLVYTFNRFQACRFGLEGVFIDPRTHQQRSIREDIMEMLEHISD
HARELHAVEAMERIREILIVGNGTSWQRRAYASEHNLADVMQLQAELWMGN

Sequences:

>Translated_371_residues
MSLMPFAPSRPLSIGVELELQLLGCNDYNLAPSAPEILRRVAKRTHPGEIKPEMTRSMIEINTSVQQEYAGLVTELRALR
DVVSEAGCFLNVAVAGGGTHPFQHWSEQKIFDAPRFHYLSELYGYLAKQFTIFGQHVHIGCPGPDEALHLTHMLSRYIPH
FIALSASSPFVQGHDTGFASARLNSVFSFPLSGRAPFVLRWNDFEKFFAKMTGTGVVESMKDFYWDIRPKPEFGTIEVRV
CDTPLTVEIAASIACYIQAMSRYIMVEQRMAPEEDDYLVYTFNRFQACRFGLEGVFIDPRTHQQRSIREDIMEMLEHISD
HARELHAVEAMERIREILIVGNGTSWQRRAYASEHNLADVMQLQAELWMGN
>Mature_370_residues
SLMPFAPSRPLSIGVELELQLLGCNDYNLAPSAPEILRRVAKRTHPGEIKPEMTRSMIEINTSVQQEYAGLVTELRALRD
VVSEAGCFLNVAVAGGGTHPFQHWSEQKIFDAPRFHYLSELYGYLAKQFTIFGQHVHIGCPGPDEALHLTHMLSRYIPHF
IALSASSPFVQGHDTGFASARLNSVFSFPLSGRAPFVLRWNDFEKFFAKMTGTGVVESMKDFYWDIRPKPEFGTIEVRVC
DTPLTVEIAASIACYIQAMSRYIMVEQRMAPEEDDYLVYTFNRFQACRFGLEGVFIDPRTHQQRSIREDIMEMLEHISDH
ARELHAVEAMERIREILIVGNGTSWQRRAYASEHNLADVMQLQAELWMGN

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=372, Percent_Identity=41.3978494623656, Blast_Score=318, Evalue=3e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_NITMU (Q2Y8S0)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_412243.1
- ProteinModelPortal:   Q2Y8S0
- SMR:   Q2Y8S0
- STRING:   Q2Y8S0
- GeneID:   3785270
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A1548
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q2Y8S0
- ProtClustDB:   PRK13516
- BioCyc:   NMUL323848:NMUL_A1548-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42223; Mature: 42092

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMPFAPSRPLSIGVELELQLLGCNDYNLAPSAPEILRRVAKRTHPGEIKPEMTRSMIE
CCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
INTSVQQEYAGLVTELRALRDVVSEAGCFLNVAVAGGGTHPFQHWSEQKIFDAPRFHYLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCCHHCCCHHHHHHH
ELYGYLAKQFTIFGQHVHIGCPGPDEALHLTHMLSRYIPHFIALSASSPFVQGHDTGFAS
HHHHHHHHHHHEEECEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHH
ARLNSVFSFPLSGRAPFVLRWNDFEKFFAKMTGTGVVESMKDFYWDIRPKPEFGTIEVRV
HHHHHHEECCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTVEIAASIACYIQAMSRYIMVEQRMAPEEDDYLVYTFNRFQACRFGLEGVFIDPR
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHCCCEEEECCC
THQQRSIREDIMEMLEHISDHARELHAVEAMERIREILIVGNGTSWQRRAYASEHNLADV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCHHHH
MQLQAELWMGN
HHHHHHHHCCC
>Mature Secondary Structure 
SLMPFAPSRPLSIGVELELQLLGCNDYNLAPSAPEILRRVAKRTHPGEIKPEMTRSMIE
CCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
INTSVQQEYAGLVTELRALRDVVSEAGCFLNVAVAGGGTHPFQHWSEQKIFDAPRFHYLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCCHHCCCHHHHHHH
ELYGYLAKQFTIFGQHVHIGCPGPDEALHLTHMLSRYIPHFIALSASSPFVQGHDTGFAS
HHHHHHHHHHHEEECEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHH
ARLNSVFSFPLSGRAPFVLRWNDFEKFFAKMTGTGVVESMKDFYWDIRPKPEFGTIEVRV
HHHHHHEECCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTVEIAASIACYIQAMSRYIMVEQRMAPEEDDYLVYTFNRFQACRFGLEGVFIDPR
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHCCCEEEECCC
THQQRSIREDIMEMLEHISDHARELHAVEAMERIREILIVGNGTSWQRRAYASEHNLADV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCHHHH
MQLQAELWMGN
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA