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The map label for this gene is yncD [H]

Identifier: 82702555

GI number: 82702555

Start: 1637326

End: 1639488

Strand: Reverse

Name: yncD [H]

Synonym: Nmul_A1426

Alternate gene names: 82702555

Gene position: 1639488-1637326 (Counterclockwise)

Preceding gene: 82702556

Following gene: 82702554

Centisome position: 51.49

GC content: 54.23

Gene sequence:

>2163_bases
TTGCCGAACCTCGTGCCTGCATCGGATTCTCCTCCCGTACAGTCCAAAACTGGGACTAATACGGCGGCTGAGGCATCGCC
GCTCGAATCATCAGGGAGGTCTTTACCGGTTCTCAATCCAGTCGTCATTACCGGCACCCGCACTGAACAATCCAGCTTCT
CCTTGCCGATGTCTATCGATGTAGTGGAGACAAAGGTTATTCAGGAGGTTCAGCCCCGGGTAAATCTTTCTGAGGCGCTT
TCCCGCGTTCCAGGTCTCGTCATTCAGAATCGCCAGAATTACGCACAGGATCTGCAAATATCCAGCCGCGGCTTTGGCGC
GCGCTCCACTTTCGGCATTCGTGGCATACGCATATTCGTCGATGACATTCCCGCCACCATGCCGGATGGCCAAGGCCAGG
CGGCGAATATCAACCTCGGTTCAACCAAACGCATCGAGGTATTGCGCGGGCCATTTTCCGCCATTTACGGCAATGCCTCA
GGCGGGGTAATACAGGCATTTACGGAGGATGGCCCAAACGAAACCACCTTATCCGGAACTCTCCTAGGCGGCAGCTATGG
CACCTCTCGCGGCGAGATCAAGCTGGGGGGGACATTAGGGGGAACGGATGTTATATCCGGGCCATTCAACTACGTAGTCG
ATATTTCCCGCTTTCAGACAAGCGGCTATCGCGATCATAGCGCGGCAACGCGTTACCAGGCCAGTGCAAAGGCTACGTAC
AGGTTTGACCATGATGCCAACCTCACTTTGGTAGTCAATGAACTGCACCAGGGCAACACGCAGGATCCTCTTGGACTCAC
GCAAGCTCAGGTTATCGAGAATCCCCGACAGGCGGATATTAGCGCCCATACCTTCAACACCCGCAAGAGCATCGACAATA
CCCAAGGCGGTGCGGTGTATGAACACAGATTCTCTGCTTCGAACAAGATCAAGCTGATCGGTTATGCAGGAACCCGCCAG
CTGGAGCAGTTTCTTGCTGTGCCACGCGGCGCGCAGATTCCTGCGACCAGTTCAGGGGGCGTAGTCGATCTTGACCGGCA
ATTTGGGGGAGCAGGCTTGCGATGGACTTATCGGAGCATGGGGGAACGTCCATTCACGCTGACCGCAGGTATCGAGTACG
AAATTTTCAAGGAGCGGCGCAAGGGGTTCGAGAATTTCTCCGGCGCAATCCTTGGCGTGCGTGGAGGTTTGCGCCGTAAT
GAAAATAATACGGTCAGTAGCCTTAGTCAATACGGGCAGGCCGAGTGGCATTTTACGCAGTCCTGGGCGCTTTCGGCCGC
CGTGCGTTACACCAATGTGAAATTCAAGTCCGAGGATTTTTTTGTCCGCCCCGGCAATGCCGATGATAGCGGCAGTTTGA
CTTTTCGCAATGTGAATCCCGTGCTGGGCTTGCTATACAAGGCGACATCGACGCTCAATCTGTACGCCAGCGGCGGATGG
GGTTTCGAAACACCCACCTTTACAGAACTTGCCTACCGGCCGGATGGTGCCTCGGGTCTCAATTTCTCTCTTCGCCCCAG
CGAGAGCCGCAATATCGAAGTGGGATTCAAGTGGCTGGCTACGGATAATACCCGCCTCAATCTCGCGCTTTTTGAGAGTG
TGGTTACCGATGAGATTCTGCCGGCGACCAATATCGGGGGGAGAGCTACTTTTCAGAACGCGACCGATACCAGGAGACGG
GGCATAGAACTTGCCGCCGTCCATCGCTTCGGGGCGGATCTTTCTGCGTATTTTTCTTATACCTTTCTTGATGCCAGGTT
TCGCGATTCCTATACCTACCAGCCACGAGCCGGCACTCCTTTCGTAATTGTAGCGGAGGGCAACCTGGTTCCCGGTATAC
CGCGTAATACCGCCTATGGGGAACTGGCGTGGCGACGCGGCCTACCAGGGTTTTCGGCAGTGATCGAGGCAATCTATCGT
GATAGGGTTTACGCTAACGATATCAATACGGAAGCTGCAAAACAGTATGCCATAGCCAATATCCGGCTCGCGTATTCGCA
TCAGCTAGGTCGTTTGAAGCTCAGCGAATTCATCCGGATAGACAATGTAAGCAACGCAAAATATGTCGGTGCCGTAATTG
TGAATGAAGGCAACGAGCGTTTTTATGAACCCTCGGCGGGGCGAAACGTGATAGTGGGGTTGAATGCAAGTTATGTGTTC
TAG

Upstream 100 bases:

>100_bases
CGGTTAGCCTCTCGCTACTTCTTCAATTGCCCGATGTTCCGGCGGAAAGCAAAAATTGTTGAAAATCCTGAACCTTGCGC
TCGTCGCGATCGGGATTGGC

Downstream 100 bases:

>100_bases
GATAGACGGGGGAAGAGGCGGCCCAGGCAGCGGTGGCATGGAGTGTTTATGGAAATACAGGCTGCATGCAAGGCTGGAAC
ATGAAGGAATGCACTGAGAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 719

Protein sequence:

>720_residues
MPNLVPASDSPPVQSKTGTNTAAEASPLESSGRSLPVLNPVVITGTRTEQSSFSLPMSIDVVETKVIQEVQPRVNLSEAL
SRVPGLVIQNRQNYAQDLQISSRGFGARSTFGIRGIRIFVDDIPATMPDGQGQAANINLGSTKRIEVLRGPFSAIYGNAS
GGVIQAFTEDGPNETTLSGTLLGGSYGTSRGEIKLGGTLGGTDVISGPFNYVVDISRFQTSGYRDHSAATRYQASAKATY
RFDHDANLTLVVNELHQGNTQDPLGLTQAQVIENPRQADISAHTFNTRKSIDNTQGGAVYEHRFSASNKIKLIGYAGTRQ
LEQFLAVPRGAQIPATSSGGVVDLDRQFGGAGLRWTYRSMGERPFTLTAGIEYEIFKERRKGFENFSGAILGVRGGLRRN
ENNTVSSLSQYGQAEWHFTQSWALSAAVRYTNVKFKSEDFFVRPGNADDSGSLTFRNVNPVLGLLYKATSTLNLYASGGW
GFETPTFTELAYRPDGASGLNFSLRPSESRNIEVGFKWLATDNTRLNLALFESVVTDEILPATNIGGRATFQNATDTRRR
GIELAAVHRFGADLSAYFSYTFLDARFRDSYTYQPRAGTPFVIVAEGNLVPGIPRNTAYGELAWRRGLPGFSAVIEAIYR
DRVYANDINTEAAKQYAIANIRLAYSHQLGRLKLSEFIRIDNVSNAKYVGAVIVNEGNERFYEPSAGRNVIVGLNASYVF

Sequences:

>Translated_720_residues
MPNLVPASDSPPVQSKTGTNTAAEASPLESSGRSLPVLNPVVITGTRTEQSSFSLPMSIDVVETKVIQEVQPRVNLSEAL
SRVPGLVIQNRQNYAQDLQISSRGFGARSTFGIRGIRIFVDDIPATMPDGQGQAANINLGSTKRIEVLRGPFSAIYGNAS
GGVIQAFTEDGPNETTLSGTLLGGSYGTSRGEIKLGGTLGGTDVISGPFNYVVDISRFQTSGYRDHSAATRYQASAKATY
RFDHDANLTLVVNELHQGNTQDPLGLTQAQVIENPRQADISAHTFNTRKSIDNTQGGAVYEHRFSASNKIKLIGYAGTRQ
LEQFLAVPRGAQIPATSSGGVVDLDRQFGGAGLRWTYRSMGERPFTLTAGIEYEIFKERRKGFENFSGAILGVRGGLRRN
ENNTVSSLSQYGQAEWHFTQSWALSAAVRYTNVKFKSEDFFVRPGNADDSGSLTFRNVNPVLGLLYKATSTLNLYASGGW
GFETPTFTELAYRPDGASGLNFSLRPSESRNIEVGFKWLATDNTRLNLALFESVVTDEILPATNIGGRATFQNATDTRRR
GIELAAVHRFGADLSAYFSYTFLDARFRDSYTYQPRAGTPFVIVAEGNLVPGIPRNTAYGELAWRRGLPGFSAVIEAIYR
DRVYANDINTEAAKQYAIANIRLAYSHQLGRLKLSEFIRIDNVSNAKYVGAVIVNEGNERFYEPSAGRNVIVGLNASYVF
>Mature_719_residues
PNLVPASDSPPVQSKTGTNTAAEASPLESSGRSLPVLNPVVITGTRTEQSSFSLPMSIDVVETKVIQEVQPRVNLSEALS
RVPGLVIQNRQNYAQDLQISSRGFGARSTFGIRGIRIFVDDIPATMPDGQGQAANINLGSTKRIEVLRGPFSAIYGNASG
GVIQAFTEDGPNETTLSGTLLGGSYGTSRGEIKLGGTLGGTDVISGPFNYVVDISRFQTSGYRDHSAATRYQASAKATYR
FDHDANLTLVVNELHQGNTQDPLGLTQAQVIENPRQADISAHTFNTRKSIDNTQGGAVYEHRFSASNKIKLIGYAGTRQL
EQFLAVPRGAQIPATSSGGVVDLDRQFGGAGLRWTYRSMGERPFTLTAGIEYEIFKERRKGFENFSGAILGVRGGLRRNE
NNTVSSLSQYGQAEWHFTQSWALSAAVRYTNVKFKSEDFFVRPGNADDSGSLTFRNVNPVLGLLYKATSTLNLYASGGWG
FETPTFTELAYRPDGASGLNFSLRPSESRNIEVGFKWLATDNTRLNLALFESVVTDEILPATNIGGRATFQNATDTRRRG
IELAAVHRFGADLSAYFSYTFLDARFRDSYTYQPRAGTPFVIVAEGNLVPGIPRNTAYGELAWRRGLPGFSAVIEAIYRD
RVYANDINTEAAKQYAIANIRLAYSHQLGRLKLSEFIRIDNVSNAKYVGAVIVNEGNERFYEPSAGRNVIVGLNASYVF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=703, Percent_Identity=42.3897581792319, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78503; Mature: 78371

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLVPASDSPPVQSKTGTNTAAEASPLESSGRSLPVLNPVVITGTRTEQSSFSLPMSID
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEH
VVETKVIQEVQPRVNLSEALSRVPGLVIQNRQNYAQDLQISSRGFGARSTFGIRGIRIFV
HHHHHHHHHHCCCCCHHHHHHHCCCEEEECCCCHHHHCEECCCCCCCCCCCCCEEEEEEE
DDIPATMPDGQGQAANINLGSTKRIEVLRGPFSAIYGNASGGVIQAFTEDGPNETTLSGT
ECCCCCCCCCCCCEEEEECCCCCEEEEEECCHHHEECCCCCCEEEEECCCCCCCEEEEEE
LLGGSYGTSRGEIKLGGTLGGTDVISGPFNYVVDISRFQTSGYRDHSAATRYQASAKATY
EECCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCHHHHEECCCEEEE
RFDHDANLTLVVNELHQGNTQDPLGLTQAQVIENPRQADISAHTFNTRKSIDNTQGGAVY
EECCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCHHCCCCCCCCEEE
EHRFSASNKIKLIGYAGTRQLEQFLAVPRGAQIPATSSGGVVDLDRQFGGAGLRWTYRSM
EEEECCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEHHCCCCCCEEEEHHHC
GERPFTLTAGIEYEIFKERRKGFENFSGAILGVRGGLRRNENNTVSSLSQYGQAEWHFTQ
CCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEH
SWALSAAVRYTNVKFKSEDFFVRPGNADDSGSLTFRNVNPVLGLLYKATSTLNLYASGGW
HHHEEEEEEEEEEEEECCCEEEECCCCCCCCCEEEEECCHHHHHHHHHCCEEEEEECCCC
GFETPTFTELAYRPDGASGLNFSLRPSESRNIEVGFKWLATDNTRLNLALFESVVTDEIL
CCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHCC
PATNIGGRATFQNATDTRRRGIELAAVHRFGADLSAYFSYTFLDARFRDSYTYQPRAGTP
CCCCCCCCEEECCCCHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCEEECCCCCCC
FVIVAEGNLVPGIPRNTAYGELAWRRGLPGFSAVIEAIYRDRVYANDINTEAAKQYAIAN
EEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCEEECCCCHHHHHHEEEEE
IRLAYSHQLGRLKLSEFIRIDNVSNAKYVGAVIVNEGNERFYEPSAGRNVIVGLNASYVF
EEEEECCCCCCEEHHHEEEECCCCCCEEEEEEEEECCCCEEECCCCCCEEEEEECCEECC
>Mature Secondary Structure 
PNLVPASDSPPVQSKTGTNTAAEASPLESSGRSLPVLNPVVITGTRTEQSSFSLPMSID
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEH
VVETKVIQEVQPRVNLSEALSRVPGLVIQNRQNYAQDLQISSRGFGARSTFGIRGIRIFV
HHHHHHHHHHCCCCCHHHHHHHCCCEEEECCCCHHHHCEECCCCCCCCCCCCCEEEEEEE
DDIPATMPDGQGQAANINLGSTKRIEVLRGPFSAIYGNASGGVIQAFTEDGPNETTLSGT
ECCCCCCCCCCCCEEEEECCCCCEEEEEECCHHHEECCCCCCEEEEECCCCCCCEEEEEE
LLGGSYGTSRGEIKLGGTLGGTDVISGPFNYVVDISRFQTSGYRDHSAATRYQASAKATY
EECCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCHHHHEECCCEEEE
RFDHDANLTLVVNELHQGNTQDPLGLTQAQVIENPRQADISAHTFNTRKSIDNTQGGAVY
EECCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCHHCCCCCCCCEEE
EHRFSASNKIKLIGYAGTRQLEQFLAVPRGAQIPATSSGGVVDLDRQFGGAGLRWTYRSM
EEEECCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEHHCCCCCCEEEEHHHC
GERPFTLTAGIEYEIFKERRKGFENFSGAILGVRGGLRRNENNTVSSLSQYGQAEWHFTQ
CCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEH
SWALSAAVRYTNVKFKSEDFFVRPGNADDSGSLTFRNVNPVLGLLYKATSTLNLYASGGW
HHHEEEEEEEEEEEEECCCEEEECCCCCCCCCEEEEECCHHHHHHHHHCCEEEEEECCCC
GFETPTFTELAYRPDGASGLNFSLRPSESRNIEVGFKWLATDNTRLNLALFESVVTDEIL
CCCCCCEEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHCC
PATNIGGRATFQNATDTRRRGIELAAVHRFGADLSAYFSYTFLDARFRDSYTYQPRAGTP
CCCCCCCCEEECCCCHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCEEECCCCCCC
FVIVAEGNLVPGIPRNTAYGELAWRRGLPGFSAVIEAIYRDRVYANDINTEAAKQYAIAN
EEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCEEECCCCHHHHHHEEEEE
IRLAYSHQLGRLKLSEFIRIDNVSNAKYVGAVIVNEGNERFYEPSAGRNVIVGLNASYVF
EEEEECCCCCCEEHHHEEEECCCCCCEEEEEEEEECCCCEEECCCCCCEEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]