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The map label for this gene is xerD [H]

Identifier: 82702511

GI number: 82702511

Start: 1574900

End: 1575907

Strand: Reverse

Name: xerD [H]

Synonym: Nmul_A1382

Alternate gene names: 82702511

Gene position: 1575907-1574900 (Counterclockwise)

Preceding gene: 82702513

Following gene: 82702510

Centisome position: 49.49

GC content: 59.72

Gene sequence:

>1008_bases
ATGGAAGAAAAGAAGCCGGAAAATGTCGTTTTGTTGGAAAATCTGTCAAAACATAACGCCGGTACGCTCGTTTCCGAACA
CGAAATGCGGGAGCGCCACCAGCGTTTTATCTCGGCGGCAACCTCGGAAAACACTCGCCGCACCTACCGCTCGGCGATCC
GGCATTTCTACGCCTGGGGCGGAGCGCTGCCTTGTGATTCAGGGGCAGTGTTGCGGTATCTCCTGGCTTATTCCGACTCC
CTGAACCCGCGCACGCTGGCGCTGCGACTGACGGCGCTAGCGCAATGGCATGCGTTCCAGGGGTTCCCGGACCCGACCGC
CGACCCGAGCGTGCGCAAAACCTTGAAGGGCATCACGCGCACCCAGGGCAAGCCGAAGAAGAAGGCGAAGGCGCTGCCAA
TTGAGGACTTGGAAGCGATCGTGGCCAAACTGGAGCCGGACACCAGCCTGATTGCGATACGGAATAATGCACTCTTGCAG
ATCGGCTTTTTCGGCGCGCTGCGCCGCAGCGAGTTGGCCGCGCTGATGGTGGAGGAATTGGGTTGGGAAACGGACGGTTT
AGTGATCACGCTCGCGCGCTCGAAGACCGACCAGGAAGGGGAAGGTGTCAGCAAGGCGATTCCCTACGGCGGTCCGGATG
GAATATGTTGCCCGGTTCGCGCCTTGAAGCGCTGGCTGGAAGCGGCAAACATCATTTCGGGGGCAGTGTTCCGGCGCGTC
ACTCGCTGGAATATCATCGGCACCAATCCGCTGAGCGACGGCAGTATCAACGATATTCTGGAGGCGTGTGCCAAAGCGGC
GGATCTAGCATACGTCCCGGAGCTCAGCAGCCATAGCTTGCGGCGCGGCTTGGCCACTAGCGCACATCGATCCGGGGCTA
ATTTCAAGGACATCAAAAGGCAAGGTGGCTGGCGACATGACGGCACGGTGCAAGGATACATCGAGGAAGCTGGGCGGTTC
GAGGCCAATGCCGCATTGACGCTGCTGCGCCGGAAGGGGAAAAAATGA

Upstream 100 bases:

>100_bases
ATAATTTCGATAATTTATGTTATCGTGACTTAATGATGAATTCTGCATCACTCTTGGCGTAACGCAGCCAAAAACCGCGA
AAGTGAGCGACAAAAAGGGT

Downstream 100 bases:

>100_bases
GGCATCAAAACCTTAGCGTACGATTTTTTCCGGATTCTGCGGCGTCCCCGGTATTGGAGAATTAAAAGGTGTTGCAAGCC
TCAATTCCTGAAAGTCCATT

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MEEKKPENVVLLENLSKHNAGTLVSEHEMRERHQRFISAATSENTRRTYRSAIRHFYAWGGALPCDSGAVLRYLLAYSDS
LNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITRTQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQ
IGFFGALRRSELAALMVEELGWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRV
TRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKRQGGWRHDGTVQGYIEEAGRF
EANAALTLLRRKGKK

Sequences:

>Translated_335_residues
MEEKKPENVVLLENLSKHNAGTLVSEHEMRERHQRFISAATSENTRRTYRSAIRHFYAWGGALPCDSGAVLRYLLAYSDS
LNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITRTQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQ
IGFFGALRRSELAALMVEELGWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRV
TRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKRQGGWRHDGTVQGYIEEAGRF
EANAALTLLRRKGKK
>Mature_335_residues
MEEKKPENVVLLENLSKHNAGTLVSEHEMRERHQRFISAATSENTRRTYRSAIRHFYAWGGALPCDSGAVLRYLLAYSDS
LNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITRTQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQ
IGFFGALRRSELAALMVEELGWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRV
TRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKRQGGWRHDGTVQGYIEEAGRF
EANAALTLLRRKGKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36906; Mature: 36906

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKKPENVVLLENLSKHNAGTLVSEHEMRERHQRFISAATSENTRRTYRSAIRHFYAWG
CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GALPCDSGAVLRYLLAYSDSLNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITR
CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQIGFFGALRRSELAALMVEEL
CCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHH
GWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRV
CCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKR
HHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
QGGWRHDGTVQGYIEEAGRFEANAALTLLRRKGKK
CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEEKKPENVVLLENLSKHNAGTLVSEHEMRERHQRFISAATSENTRRTYRSAIRHFYAWG
CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GALPCDSGAVLRYLLAYSDSLNPRTLALRLTALAQWHAFQGFPDPTADPSVRKTLKGITR
CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TQGKPKKKAKALPIEDLEAIVAKLEPDTSLIAIRNNALLQIGFFGALRRSELAALMVEEL
CCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHH
GWETDGLVITLARSKTDQEGEGVSKAIPYGGPDGICCPVRALKRWLEAANIISGAVFRRV
CCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TRWNIIGTNPLSDGSINDILEACAKAADLAYVPELSSHSLRRGLATSAHRSGANFKDIKR
HHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
QGGWRHDGTVQGYIEEAGRFEANAALTLLRRKGKK
CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]