| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
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The map label for this gene is yhdF [H]
Identifier: 82702309
GI number: 82702309
Start: 1359530
End: 1360411
Strand: Reverse
Name: yhdF [H]
Synonym: Nmul_A1180
Alternate gene names: 82702309
Gene position: 1360411-1359530 (Counterclockwise)
Preceding gene: 82702310
Following gene: 82702308
Centisome position: 42.72
GC content: 48.87
Gene sequence:
>882_bases ATGACCAATGAGACCGAGAAATACGAGAAAAAAGGCAGTGACATTCCGAAGCAGCAGCAATCACGTCAACCCGGGCTGCA GACTGAAATGCACCCTCAACCCGATTCCGGCATGGCCGAATATCATGGAAGCGGTAAACTGGAGTCAAAAGTTGCGATCG TTACCGGAGGAGATAGTGGTATTGGACGATCTGTCGCCATTGCTTTCGCAAAGGAAGGAGCAGACATTGCAATCGCCTAT CTCGACGAGCATGAAGATGCTCAACGCACTAAAGAAGAGGTCGAGAAGTGCGGAAGAAAATGCATTTTAATCGCGGGTGA TGTGGGGGACGAAAAATTCTGTGCCGAGATAGTGGAAAAAACGGTTTCCACCTTTCATCATGTCGAAATACTTGTAAATA ACTCGGCCGAGCAGCATGTTCAGGAAAGCATTCTCGATATCGATAAGGCCCAACTCGAGAAAACTTTCCGCACGAACATA TTCTCAATGTTCCATATGGTGAAGGCTGTACTCCCGCATCTGAAAAAAGGAGCGCGCATCATCAACACCACCTCTGTCAC CGCCTACAAGGGAAGTCCTCACCTGCTTGATTACTCTGCGACCAAGGGTGCAATTGTCGCGTTTACCCGTTCTCTGTCTC TCCAGCTGATCGAACAGGGAATACATGTAAATGCGGTTGCTCCCGGTCCAATATGGACACCGCTGATACCGGCCACTTTT CCTCCGGATAAAGTCGGCGATTTTGGAAAGAACGTCCCCATGAAACGCGCGGGGCAGCCTGATGAAGTCGCTCCTTGTTA TGTCTTTCTCGCCTCTCAGGATTGTTCTTACATGTCAGGACAGGTACTGCATCCCAATGGCGGTAATATAATAAACGGAT AA
Upstream 100 bases:
>100_bases TCAACCAGATTATCGAAATTATCGAAAAGAACCCCGAATCGCCCACCCATCGGTGGACAACATACCCGGATACGGGCTTA ACCAGATCAGCGAGAGAGTC
Downstream 100 bases:
>100_bases TAACAATTTGCAGGAGTTACTCCTGATAGGGTAAGCGTCACAGAGATATGATTACTCAACAGGATATATAAATATAATCC CGTTTCGAGGTAGAAGAGAG
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTNETEKYEKKGSDIPKQQQSRQPGLQTEMHPQPDSGMAEYHGSGKLESKVAIVTGGDSGIGRSVAIAFAKEGADIAIAY LDEHEDAQRTKEEVEKCGRKCILIAGDVGDEKFCAEIVEKTVSTFHHVEILVNNSAEQHVQESILDIDKAQLEKTFRTNI FSMFHMVKAVLPHLKKGARIINTTSVTAYKGSPHLLDYSATKGAIVAFTRSLSLQLIEQGIHVNAVAPGPIWTPLIPATF PPDKVGDFGKNVPMKRAGQPDEVAPCYVFLASQDCSYMSGQVLHPNGGNIING
Sequences:
>Translated_293_residues MTNETEKYEKKGSDIPKQQQSRQPGLQTEMHPQPDSGMAEYHGSGKLESKVAIVTGGDSGIGRSVAIAFAKEGADIAIAY LDEHEDAQRTKEEVEKCGRKCILIAGDVGDEKFCAEIVEKTVSTFHHVEILVNNSAEQHVQESILDIDKAQLEKTFRTNI FSMFHMVKAVLPHLKKGARIINTTSVTAYKGSPHLLDYSATKGAIVAFTRSLSLQLIEQGIHVNAVAPGPIWTPLIPATF PPDKVGDFGKNVPMKRAGQPDEVAPCYVFLASQDCSYMSGQVLHPNGGNIING >Mature_292_residues TNETEKYEKKGSDIPKQQQSRQPGLQTEMHPQPDSGMAEYHGSGKLESKVAIVTGGDSGIGRSVAIAFAKEGADIAIAYL DEHEDAQRTKEEVEKCGRKCILIAGDVGDEKFCAEIVEKTVSTFHHVEILVNNSAEQHVQESILDIDKAQLEKTFRTNIF SMFHMVKAVLPHLKKGARIINTTSVTAYKGSPHLLDYSATKGAIVAFTRSLSLQLIEQGIHVNAVAPGPIWTPLIPATFP PDKVGDFGKNVPMKRAGQPDEVAPCYVFLASQDCSYMSGQVLHPNGGNIING
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=28.4, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.3149606299213, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=29.277566539924, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=30.8370044052863, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI5031737, Length=240, Percent_Identity=27.9166666666667, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=27.1653543307087, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=29.6442687747036, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=29.3388429752066, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=25.296442687747, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI31542939, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=240, Percent_Identity=25, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.3193717277487, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=26.5060240963855, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=27.6679841897233, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI310128830, Length=176, Percent_Identity=28.9772727272727, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI310115468, Length=176, Percent_Identity=28.9772727272727, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7706318, Length=233, Percent_Identity=24.4635193133047, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI31543615, Length=190, Percent_Identity=28.4210526315789, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=30.8724832214765, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=26.3959390862944, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=278, Percent_Identity=49.2805755395683, Blast_Score=272, Evalue=2e-74, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=32.7935222672065, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.2448979591837, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=29.5546558704453, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=31.5175097276265, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.1138211382114, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=29.2682926829268, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=32.4, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=26.7782426778243, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=26.2096774193548, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=23.2931726907631, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=30.5660377358491, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=32.1969696969697, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.6, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.5757575757576, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=32.9501915708812, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.7984790874525, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=31.9391634980989, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=31.7269076305221, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=32.3308270676692, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=31.2977099236641, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=271, Percent_Identity=32.1033210332103, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=31.1111111111111, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=31.4606741573034, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=31.5789473684211, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=27.7777777777778, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=31.0606060606061, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=30.3846153846154, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.2681992337165, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=29.8507462686567, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=28.2527881040892, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.1853281853282, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.9242424242424, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=29.8039215686275, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17544670, Length=277, Percent_Identity=25.2707581227437, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=29.2490118577075, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17561272, Length=264, Percent_Identity=29.5454545454545, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.8617886178862, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17564282, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=253, Percent_Identity=23.7154150197628, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71982365, Length=232, Percent_Identity=29.7413793103448, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=27.1794871794872, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=209, Percent_Identity=28.7081339712919, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=223, Percent_Identity=28.6995515695067, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.4820717131474, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.7269076305221, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.4117647058824, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=29.2490118577075, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=29.718875502008, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=29.8387096774194, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=28.2945736434109, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=27.6, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=28.9855072463768, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24644337, Length=228, Percent_Identity=32.4561403508772, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=29.0816326530612, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584748, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI161076933, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24580925, Length=234, Percent_Identity=24.3589743589744, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=23.8805970149254, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31856; Mature: 31724
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNETEKYEKKGSDIPKQQQSRQPGLQTEMHPQPDSGMAEYHGSGKLESKVAIVTGGDSG CCCCHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCC IGRSVAIAFAKEGADIAIAYLDEHEDAQRTKEEVEKCGRKCILIAGDVGDEKFCAEIVEK CCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH TVSTFHHVEILVNNSAEQHVQESILDIDKAQLEKTFRTNIFSMFHMVKAVLPHLKKGARI HHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE INTTSVTAYKGSPHLLDYSATKGAIVAFTRSLSLQLIEQGIHVNAVAPGPIWTPLIPATF EEECEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC PPDKVGDFGKNVPMKRAGQPDEVAPCYVFLASQDCSYMSGQVLHPNGGNIING CCHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCC >Mature Secondary Structure TNETEKYEKKGSDIPKQQQSRQPGLQTEMHPQPDSGMAEYHGSGKLESKVAIVTGGDSG CCCHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCC IGRSVAIAFAKEGADIAIAYLDEHEDAQRTKEEVEKCGRKCILIAGDVGDEKFCAEIVEK CCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH TVSTFHHVEILVNNSAEQHVQESILDIDKAQLEKTFRTNIFSMFHMVKAVLPHLKKGARI HHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE INTTSVTAYKGSPHLLDYSATKGAIVAFTRSLSLQLIEQGIHVNAVAPGPIWTPLIPATF EEECEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC PPDKVGDFGKNVPMKRAGQPDEVAPCYVFLASQDCSYMSGQVLHPNGGNIING CCHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]