| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
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The map label for this gene is ligD [H]
Identifier: 82702306
GI number: 82702306
Start: 1355243
End: 1357804
Strand: Direct
Name: ligD [H]
Synonym: Nmul_A1177
Alternate gene names: 82702306
Gene position: 1355243-1357804 (Clockwise)
Preceding gene: 82702305
Following gene: 82702312
Centisome position: 42.56
GC content: 53.71
Gene sequence:
>2562_bases ATGACAAATGATGACTCGCTTAAAACTTACCGGGCCAAACGTGATTTCTCGGTAACACCTGAGCCAAGCGGCGTTGCCAG TGGCAAGACAGCCATCAAGAGTACTGCCAAGGTTTTGTCGTTTGTTGTCCAGAAGCACTGGGCAACGCGTCTGCACTACG ACTTCAGGCTGGAACTGGAAGGAACGATGAAGAGCTGGGCTGTTCCCAAAGGCCCCAGTTTCGACCCTAACGACAAACGC ATGGCGGTCCACGTCGAAGACCATCCCATTTCCTATAACAGTTTTGAAGGCGAGATACCCTCAGGTCAGTATGGCGCCGG TAAAGTCATTATTTGGGATAAGGGAACCTGGATTCCTCTCGAAGATCCGCACAAGGGGTATCGTGACGGCAAGCTGAAAT TCGAGCTGCGGGGGCTCAAGCTGAAAGGGCACTGGGCCTTGGTGCGCATGAGAAAGGAAGAAAACAAAAAGCAGGAACCC TGGCTGCTGATAAAAGAAAAGGATGAATATGTCCGTTCATCGCGGGAGTATAGCGTGGTGGACGAAATGCCGGACAGTGT GGCCGAACTTGACGTGCCAGACGTGCCACAACCTTCCAAAGCTTCCGCAACATCGGGAAGCAGCTCACCCAAAAGCAGTT CGATATTCCGCAAGGGAACGAAAACGACCTTGCCGGACAATGCGCGCAAGGCTGAGCTTCCGCGGACATTGACGCCGGAG CTCGCCACGCTGGTGGACGAGCCTCCTGTGGATCCGGAAGAGTGGATTTACGAAATCAAGTTTGACGGGTACCGGATGTT GAGCAGAATAGAGGGAGGAGAAGTCCGCCTCATAACCCGAAACGGAAATGACTGGTCTCATAAGCTGCCGCATCTGATAA AAGCGTTGGGAAAGCTCAAACTGAAGTCGTCCTGGCTCGATGGCGAAATTGCGGTGCTGGATGAAAACGGTATTCCCGAT TTCCAGTCGTTGCAGAATGCCTTCGACAGCGCGCATACCGAGAGCATCATTTATTATCTCTTCGATGTGCCCTTTTACGA GGGATATGATTTGCGGGACGCTTCCCTTGTCGAACGCCGCGCCTTACTGCAAAAACTGTTTGAGGCACACGCCCCTGATG AAATACGCTTCAGCGACGTTTTCGATGTTTCTCCAGCGGAAATTCTCGATTCCGCTTGCCGGCTTGGACTGGAAGGAGTG ATCGGCAAACGTAAAACCTCGGTTTATGTCTCGCGCCGATCCCAGGACTGGATAAAGCTCAAATGTAAAAACCGCCAGGA ATTCGTTATCGGCGGATATACAGATCCCAAAGGTACGCGGAAGGGTATTGGTTCTCTTCTGCTCGGTTATTATGATGAAG ACCGAAAACTCAGATATGCAGGGAATGTAGGCGCGGGATTCAGCGATAAGACGCTGGAGGACCTCAGGGCAAGGTTGGAC AGAATTGCTTTGACGGATAGCCCTTTTGTGAAAGCAAATGGCCTCGATAAAAACGCGCATTGGGTCGAACCCCGGCTTAT CGCGGAAGTTTCCTTCGGTGAATGGACGCGAGGAGGTCACATTCGTCACTCGGTATTCCACGGTTTGAGATCCGACAAAA AAGCGGATGTCATTGTTCGCGAGAAGCCCGTGCATCCCGCGGCGAAGTCGGCGCCTGCAAGCGCCATTCCAAAATCCCTG AAAGTGACGAACCCGGACCGAGTGATCGATCCCTCCACCGGGTTTACAAAGGTCGATCTCATACGCTACTACGCGCTGGT AGCGCCTTTGATGCTGCCTCACCTCGCACGGCGGCCGGTTTCACTCGTGCGTGCTCCCGAGGGGGTATCGGGCGAACTCT TTTTTCAGAAGCATTGGGAGAAAGAGAACATGCCGGGGATCGAGCAGCTTGATCCATCGCTCGACCCCGACCATCCTCCG CTGCTCGAAGTTTCAACCGCTGAAGGCCTTCTTTCCGCAGTGCAGATGAACGTGATCGAGTTTCATACGTGGAACGCCAC CAAGAATGTCATTGGCAAGCCTGACAGAATCGCGTTCGACCTGGACCCCGGCAGCGGAGTCGAATGGGCCCTCATCCAGG AGTCGGCGCAGCTCGTCAATGTCTTTCTCAGGGAACTGGGGTTGAAATCTTTTCTGAAAACGAGTGGGGGCAAAGGCCTG CACATCGTCGTGCCGATCAGGAGGCTGCGTGATTGGGATACGGTGAAAGGTTTCTCTCAGGCCATCGTACAGCATCTGGC TAAAACCATTCCGACGCGTTTCACCGCAAAAAGCGGGCCTCGCAACCGGGTGGGAAAGATCTTCATCGATTACCTGCGCA ATGGGTTCGGAGCCACCACCGTATCCGCCTGGTCAGTACGCGCCCGGCCTGGATTGGGCGTTTCTGTACCGCTGGCGTGG GAAGAGCTGTCCTCGCTGAAAAGCAGTACTCGCTGGTCCGCTTCCAATATTCATGAACGCCTGGATAAGGGTAATGACCC CTGGGCCGACTACGCAGAGACGAATCAATCGATAGTTCCTGCCATGAAAAAGCTGGGATTCACCCCTTCATCAAAGGCAT GA
Upstream 100 bases:
>100_bases CCGGCGACCTGTCAGAAAGCCCGCCAAATCGACGACTGCCTCATCTGCGCCTGCCCGCAGCGCACACAAGCGCCGGGCGG TATAGGGCGAATTCGATAGA
Downstream 100 bases:
>100_bases AGGCGCTATCCGGACAAATCTCATGGCTTCACTCCTGTAACCAGGCTGTAGTAACCGAAGGCCGGATGCACTTCGATGCC CTCAAATCCCGCTTCCGCCA
Product: ATP-dependent DNA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 852
Protein sequence:
>853_residues MTNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELEGTMKSWAVPKGPSFDPNDKR MAVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPLEDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEP WLLIKEKDEYVRSSREYSVVDEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPE LATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLKLKSSWLDGEIAVLDENGIPD FQSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERRALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGV IGKRKTSVYVSRRSQDWIKLKCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLD RIALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVREKPVHPAAKSAPASAIPKSL KVTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPVSLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPP LLEVSTAEGLLSAVQMNVIEFHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGL HIVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATTVSAWSVRARPGLGVSVPLAW EELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVPAMKKLGFTPSSKA
Sequences:
>Translated_853_residues MTNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELEGTMKSWAVPKGPSFDPNDKR MAVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPLEDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEP WLLIKEKDEYVRSSREYSVVDEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPE LATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLKLKSSWLDGEIAVLDENGIPD FQSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERRALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGV IGKRKTSVYVSRRSQDWIKLKCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLD RIALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVREKPVHPAAKSAPASAIPKSL KVTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPVSLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPP LLEVSTAEGLLSAVQMNVIEFHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGL HIVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATTVSAWSVRARPGLGVSVPLAW EELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVPAMKKLGFTPSSKA >Mature_852_residues TNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELEGTMKSWAVPKGPSFDPNDKRM AVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPLEDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEPW LLIKEKDEYVRSSREYSVVDEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPEL ATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLKLKSSWLDGEIAVLDENGIPDF QSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERRALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGVI GKRKTSVYVSRRSQDWIKLKCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLDR IALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVREKPVHPAAKSAPASAIPKSLK VTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPVSLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPPL LEVSTAEGLLSAVQMNVIEFHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGLH IVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATTVSAWSVRARPGLGVSVPLAWE ELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVPAMKKLGFTPSSKA
Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]
COG id: COG1793
COG function: function code L; ATP-dependent DNA ligase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent DNA ligase family [H]
Homologues:
Organism=Homo sapiens, GI4557719, Length=325, Percent_Identity=28.6153846153846, Blast_Score=101, Evalue=4e-21, Organism=Drosophila melanogaster, GI24762424, Length=326, Percent_Identity=27.3006134969325, Blast_Score=83, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012310 - InterPro: IPR014146 - InterPro: IPR014145 - InterPro: IPR014143 [H]
Pfam domain/function: PF01068 DNA_ligase_A_M [H]
EC number: =6.5.1.1 [H]
Molecular weight: Translated: 95585; Mature: 95454
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS50160 DNA_LIGASE_A3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELE CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEC GTMKSWAVPKGPSFDPNDKRMAVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPL CCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC EDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEPWLLIKEKDEYVRSSREYSVV CCCCCCCCCCEEEEEEEEEEEECCEEEEEEHHHCCCCCCCEEEEECCHHHHHCCCCEEHH DEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPE HHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCHH LATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLK HHHHHCCCCCCHHHEEEEEEECHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LKSSWLDGEIAVLDENGIPDFQSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERR HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHH ALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGVIGKRKTSVYVSRRSQDWIKL HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCEEEE KCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLD EECCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHHHHHHHH RIALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVR HEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEE EKPVHPAAKSAPASAIPKSLKVTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPV ECCCCCCCCCCCHHHCCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH SLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPPLLEVSTAEGLLSAVQMNVIE HHHCCCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHEEE FHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGL EEECCCCHHHCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE HIVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATT EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCE VSAWSVRARPGLGVSVPLAWEELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVP EEEEEEECCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHCCCHHHH AMKKLGFTPSSKA HHHHCCCCCCCCC >Mature Secondary Structure TNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELE CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEC GTMKSWAVPKGPSFDPNDKRMAVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPL CCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC EDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEPWLLIKEKDEYVRSSREYSVV CCCCCCCCCCEEEEEEEEEEEECCEEEEEEHHHCCCCCCCEEEEECCHHHHHCCCCEEHH DEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPE HHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCHH LATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLK HHHHHCCCCCCHHHEEEEEEECHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LKSSWLDGEIAVLDENGIPDFQSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERR HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHH ALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGVIGKRKTSVYVSRRSQDWIKL HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCEEEE KCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLD EECCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHHHHHHHH RIALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVR HEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEE EKPVHPAAKSAPASAIPKSLKVTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPV ECCCCCCCCCCCHHHCCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH SLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPPLLEVSTAEGLLSAVQMNVIE HHHCCCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHEEE FHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGL EEECCCCHHHCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE HIVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATT EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCE VSAWSVRARPGLGVSVPLAWEELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVP EEEEEEECCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHCCCHHHH AMKKLGFTPSSKA HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]