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The map label for this gene is ycfD [H]

Identifier: 82702272

GI number: 82702272

Start: 1313896

End: 1315143

Strand: Reverse

Name: ycfD [H]

Synonym: Nmul_A1143

Alternate gene names: 82702272

Gene position: 1315143-1313896 (Counterclockwise)

Preceding gene: 82702273

Following gene: 82702271

Centisome position: 41.3

GC content: 53.21

Gene sequence:

>1248_bases
ATGATTGCACCGTTGCCCCGCTGTATGTCGTGCAGCCATTGTTACCTTCACCAAAACGCTCACACCGGTAATCCCATGAC
GAAAATCCGGCTTTTAGGCGGCCTCTCGCCCAGCGACTTCCTTCAGGATCATTGGCAGAAAAAACCTTTGCTGATACGCA
AAGCCTTGCCGGATTTCAGCGGACTGCTGGATGCCAATGAGCTTATCGACCTGGCCTGTCAGGAAGATGCGCAATCGCGT
CTGGTTACCCGTAGAAACGGCCGATGGGAGGTGAGGCATGGCCCCTTCGCACCTCGCGCTTTCGCACGGCTGCCGCAGAA
AGGCTGGACTCTGCTGGTGCAGGACGTCAATCACTTCCTTCCGGCGGCGCGTGAACTGCTGCTGAAATTCAACTTCATTC
CACATTCCCGGCTCGATGATCTGATGGTCAGCTACGCTCCCGAAGACGGGGGCGTGGGGCCCCACTTTGACTCCTACGAC
GTTTTTCTGCTGCAAGGAACAGGCCGCAGACGCTGGCGAATATCGGGCCAGAAGGACAGAACGCTGGTGGCCGCCGCACC
GCTCAAGATTCTGCAGGATTTCAGGCCGGAGCAGGAATGGGTACTGGAACCAGGCGACATGCTGTATTTGCCGCCCGGCT
ATGCGCACGATGGAGTTGCGGTGGAACCCTGCATGACCTATTCCATCGGTTTTCGCGCACCCACCTATCAGGAGCTCGCG
ATGCAGTTTCTCGTTCATCTCCAGGACAGCTGTGAAATAGCGGGTATCTACGAGGATCCGGATCTCAGGATTCAAACTCA
TCCCGGACAAATCAGTTCCGCGATGCTGGATCAGGTCAACGCGGCGCTCGACAAAATCGAGTGGGACAACGTTGAAGTGG
AACGTTTTATCGGTATGTATTTAACCGAACCCAAACCTCACGTTTTTTTTATGCCTCCTCAGGAGCCGATATCCGAACGG
AAATTCGTGCATCAGATAAGAAAAGGAAAACTGCAACTGGATCTGAAAAGCCGCATGCTCTTCAGGGAAAACAGAATTTT
CCTGAACGGAGACGTATATGAAGTAGGAAAAACCGCACAACGGATACTAGGAGAGCTGGCCGATCGTCTTGCCTTATCCC
CTGTGAGAGATATCGATGCCGAAACACAGGCGCTGCTATATCAGTGGTACCTCGATGGTTACGTCGTTTATGTTGAAGAT
ACCGGGGCAGTTGAGGAAATCCAGGAATCGATAATAGAAAGAAAGTAA

Upstream 100 bases:

>100_bases
CCCACATGGTTTGAGATCAGCCGCACTGACCTGGATAAGATGTTCATGCGTGGCAGATAAAAGAATTGCTTGCATCCGGT
TATCGCCGGAAAAGTCCGAA

Downstream 100 bases:

>100_bases
CCTGATGCGGCGAGCCGAGCAAAAGACAGAGCAGCAAGTCAGTGAAGGCATGCAGTGATTCAGAAATGCAATCCCAGGTT
CCCCGAGTCCCGTTCCAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MIAPLPRCMSCSHCYLHQNAHTGNPMTKIRLLGGLSPSDFLQDHWQKKPLLIRKALPDFSGLLDANELIDLACQEDAQSR
LVTRRNGRWEVRHGPFAPRAFARLPQKGWTLLVQDVNHFLPAARELLLKFNFIPHSRLDDLMVSYAPEDGGVGPHFDSYD
VFLLQGTGRRRWRISGQKDRTLVAAAPLKILQDFRPEQEWVLEPGDMLYLPPGYAHDGVAVEPCMTYSIGFRAPTYQELA
MQFLVHLQDSCEIAGIYEDPDLRIQTHPGQISSAMLDQVNAALDKIEWDNVEVERFIGMYLTEPKPHVFFMPPQEPISER
KFVHQIRKGKLQLDLKSRMLFRENRIFLNGDVYEVGKTAQRILGELADRLALSPVRDIDAETQALLYQWYLDGYVVYVED
TGAVEEIQESIIERK

Sequences:

>Translated_415_residues
MIAPLPRCMSCSHCYLHQNAHTGNPMTKIRLLGGLSPSDFLQDHWQKKPLLIRKALPDFSGLLDANELIDLACQEDAQSR
LVTRRNGRWEVRHGPFAPRAFARLPQKGWTLLVQDVNHFLPAARELLLKFNFIPHSRLDDLMVSYAPEDGGVGPHFDSYD
VFLLQGTGRRRWRISGQKDRTLVAAAPLKILQDFRPEQEWVLEPGDMLYLPPGYAHDGVAVEPCMTYSIGFRAPTYQELA
MQFLVHLQDSCEIAGIYEDPDLRIQTHPGQISSAMLDQVNAALDKIEWDNVEVERFIGMYLTEPKPHVFFMPPQEPISER
KFVHQIRKGKLQLDLKSRMLFRENRIFLNGDVYEVGKTAQRILGELADRLALSPVRDIDAETQALLYQWYLDGYVVYVED
TGAVEEIQESIIERK
>Mature_415_residues
MIAPLPRCMSCSHCYLHQNAHTGNPMTKIRLLGGLSPSDFLQDHWQKKPLLIRKALPDFSGLLDANELIDLACQEDAQSR
LVTRRNGRWEVRHGPFAPRAFARLPQKGWTLLVQDVNHFLPAARELLLKFNFIPHSRLDDLMVSYAPEDGGVGPHFDSYD
VFLLQGTGRRRWRISGQKDRTLVAAAPLKILQDFRPEQEWVLEPGDMLYLPPGYAHDGVAVEPCMTYSIGFRAPTYQELA
MQFLVHLQDSCEIAGIYEDPDLRIQTHPGQISSAMLDQVNAALDKIEWDNVEVERFIGMYLTEPKPHVFFMPPQEPISER
KFVHQIRKGKLQLDLKSRMLFRENRIFLNGDVYEVGKTAQRILGELADRLALSPVRDIDAETQALLYQWYLDGYVVYVED
TGAVEEIQESIIERK

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=338, Percent_Identity=33.7278106508876, Blast_Score=209, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 47549; Mature: 47549

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPLPRCMSCSHCYLHQNAHTGNPMTKIRLLGGLSPSDFLQDHWQKKPLLIRKALPDFS
CCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHCCCHH
GLLDANELIDLACQEDAQSRLVTRRNGRWEVRHGPFAPRAFARLPQKGWTLLVQDVNHFL
HHCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCCCCCEEHHHHHHHHH
PAARELLLKFNFIPHSRLDDLMVSYAPEDGGVGPHFDSYDVFLLQGTGRRRWRISGQKDR
HHHHHHHHHHCCCCCCHHHHHHEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
TLVAAAPLKILQDFRPEQEWVLEPGDMLYLPPGYAHDGVAVEPCMTYSIGFRAPTYQELA
EEEEHHHHHHHHHCCCCHHEEECCCCEEEECCCCCCCCEEECCEEEEEECCCCCCHHHHH
MQFLVHLQDSCEIAGIYEDPDLRIQTHPGQISSAMLDQVNAALDKIEWDNVEVERFIGMY
HHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LTEPKPHVFFMPPQEPISERKFVHQIRKGKLQLDLKSRMLFRENRIFLNGDVYEVGKTAQ
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHCCEEEECCCHHHHHHHHH
RILGELADRLALSPVRDIDAETQALLYQWYLDGYVVYVEDTGAVEEIQESIIERK
HHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIAPLPRCMSCSHCYLHQNAHTGNPMTKIRLLGGLSPSDFLQDHWQKKPLLIRKALPDFS
CCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHCCCHH
GLLDANELIDLACQEDAQSRLVTRRNGRWEVRHGPFAPRAFARLPQKGWTLLVQDVNHFL
HHCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCCCCCEEHHHHHHHHH
PAARELLLKFNFIPHSRLDDLMVSYAPEDGGVGPHFDSYDVFLLQGTGRRRWRISGQKDR
HHHHHHHHHHCCCCCCHHHHHHEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
TLVAAAPLKILQDFRPEQEWVLEPGDMLYLPPGYAHDGVAVEPCMTYSIGFRAPTYQELA
EEEEHHHHHHHHHCCCCHHEEECCCCEEEECCCCCCCCEEECCEEEEEECCCCCCHHHHH
MQFLVHLQDSCEIAGIYEDPDLRIQTHPGQISSAMLDQVNAALDKIEWDNVEVERFIGMY
HHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LTEPKPHVFFMPPQEPISERKFVHQIRKGKLQLDLKSRMLFRENRIFLNGDVYEVGKTAQ
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHCCEEEECCCHHHHHHHHH
RILGELADRLALSPVRDIDAETQALLYQWYLDGYVVYVEDTGAVEEIQESIIERK
HHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]