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The map label for this gene is yfdE [H]

Identifier: 82702098

GI number: 82702098

Start: 1126600

End: 1128501

Strand: Reverse

Name: yfdE [H]

Synonym: Nmul_A0969

Alternate gene names: 82702098

Gene position: 1128501-1126600 (Counterclockwise)

Preceding gene: 82702099

Following gene: 82702097

Centisome position: 35.44

GC content: 56.68

Gene sequence:

>1902_bases
ATGAAGGGTCCGAAAAGCATAACCCCTGATTTTGCCCCCATAGCCTCCTCGTTTCTTTATCAGTCCGAAGCATTGGGGAT
GCAAACCGTAGCAGATGGAAATTGTGCAGGCGACGAGACATTGTGCTTCGAATTCGAAACACCCCACACCGCCCCTGTCA
CATGTGAGATCACCCGATGGGAAGATCCTTTCCGGCAGGCCGCCGTAAGCGAAAACATCATGCAGGCAGCATGCGGATTG
ATGTCGGTGCACGGGCGAAGCCATCGGCAGCCGAAACCTCTGGGGCTGAACTACGTTTCGACCTTGACTGCGGCACTGGC
GCTTCAGGGCAGCATCGCCGCTTCCATTGCCCGGCTGCGGGGACTGCCTGTTTCCAGCAGTACTGTCTCGATGGCAGCCG
CAGGCTTGTTGAGCATGAGTCAGTATATCGCCGGGGCGACTGCTTCGGAGTCTCCTGAAACCACCGAGGCCGCTGAAGCC
ACTCGTCCCCTTCCTGGCTCATCCCCCGCTTGCCCTCCCTTTGTCTCCCTGGACGGAGTCATTTTTGAACTCGAAACACT
TGACGCCGGCCCCTGGCAAAGATTCTGGTCAACACTGGGTGTAAGTTCAGCAGCGGCGGGAAAAGGATGGAGAGTTTTTC
TGCTGCGATACGCAAAAGCGGCCTCGCCATTGCCGGATGAGCTGTCCCGCGCTATCTCGAGGCTGACCTATCACCGCATC
TCGCAAGTGTGTGCGAGAACCGGCATGGCTATCTGCCCCGTCCGCTCGATCGATGACAGGGCACAGGACGACGATGCCAG
ACAAATCTGGCAGCAAGGCCCGTGGGCGTTTTCGTCGTTCTCATCCGAACCAAAACCGAATGGAGAATACCTGCTCCCCG
CGGGCGGCGCATTGCCGGAGGATGATTTGCCGTTAAGCGGATTCACAGTGATCGAATCATGCCGGCGCATACAAGGTCCT
CTCGCCGGGCATTTGCTCGCACTCCTCGGGGCAACCGTTATCAGGATAGAGCCGCCAGGCGGCGATCCGCTGCGAGGAAT
GCCGCCCATGGCTGCAGGTTGCTCCGCGCGTTTCCAGGCGCTCAACCATCTCAAAACGGTGCGCGAAATCGATATCAAAT
CCGCAGCTGGAAAAACAGAAATCAGGGAGCTGGCACGGCACGCCGATATTTTTCTGCACAATTGGGCGCCGGGCAAAGCG
GTACTGCTCAATCTCGATCATGGCGATCTGGCGGCAATCAACCCCTCCCTGATTTATGCGTATGCAGGCGGATGGGCCAC
CGATTGTGCCGAGCACGTCTCTTCAAATTCAATGCCCGGAACGGATTTCATGGCTCAAGCCTATTCGGGAGTGGCAGGAA
AGGTCGGAGGAGGTGGCAGCAGCCGTGGCGGCTCCTTGTTCACCGTCCTGGATGTGCTCGGAGGCGTGGTAGCGGCTCAA
GGTGTCACGATTGCACTGCTTAACCGGTGCATGAACAATGTGGGGGCGAAGGTCACTTCCTCGCTCATGAGCGCAGCAAC
ACTTTTGTGTGCCGAGGATTTCCGGGATATATACAGTTTGCCGGCTTCCGGTTCAAAACCTTCGACAAGTATCATCAATG
ACGTTTACGCCACAAGGCAGGGCAGGATTGCAATCGAATGCCCCGATGTGGATACGGTATTACGGCTCGCGGAAGTCCTC
GACCTTACTCCTGGCATTGAAAACAATGGCTTCCAGCAATGCTTGAGCGAAGTGTTCCTCTCAAAAACGGCTGACCAATG
GGTTGAACTCTTCCAGCACGCAGGCATTCCCTCCGCCGTCGTCATCGAAGATCTTGTCGACCTTCAAACCCTGGCGCATC
TGCAACCAGGGCTGACCTCCGGTTCTTATACCCAAGTCAATTCTCCCTGGAGATTTAAATGA

Upstream 100 bases:

>100_bases
CTTGCTGACCATCCTGCCTGCCGTTGCAGGGGGTTGAGTCCGAAATTATTCCTGTCCCGTGAGAAACATGAGCATGAATC
GAACATTGACGGGTTGTGTG

Downstream 100 bases:

>100_bases
ACCATTCCGGCATCCTGGATATGGTCCCCGCCGAGGTCCGCGCGCAATGGGCCCGGCAGGGAATCTATCCGAATAAATCC
CTGTACGAGTTGTTTTGCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MKGPKSITPDFAPIASSFLYQSEALGMQTVADGNCAGDETLCFEFETPHTAPVTCEITRWEDPFRQAAVSENIMQAACGL
MSVHGRSHRQPKPLGLNYVSTLTAALALQGSIAASIARLRGLPVSSSTVSMAAAGLLSMSQYIAGATASESPETTEAAEA
TRPLPGSSPACPPFVSLDGVIFELETLDAGPWQRFWSTLGVSSAAAGKGWRVFLLRYAKAASPLPDELSRAISRLTYHRI
SQVCARTGMAICPVRSIDDRAQDDDARQIWQQGPWAFSSFSSEPKPNGEYLLPAGGALPEDDLPLSGFTVIESCRRIQGP
LAGHLLALLGATVIRIEPPGGDPLRGMPPMAAGCSARFQALNHLKTVREIDIKSAAGKTEIRELARHADIFLHNWAPGKA
VLLNLDHGDLAAINPSLIYAYAGGWATDCAEHVSSNSMPGTDFMAQAYSGVAGKVGGGGSSRGGSLFTVLDVLGGVVAAQ
GVTIALLNRCMNNVGAKVTSSLMSAATLLCAEDFRDIYSLPASGSKPSTSIINDVYATRQGRIAIECPDVDTVLRLAEVL
DLTPGIENNGFQQCLSEVFLSKTADQWVELFQHAGIPSAVVIEDLVDLQTLAHLQPGLTSGSYTQVNSPWRFK

Sequences:

>Translated_633_residues
MKGPKSITPDFAPIASSFLYQSEALGMQTVADGNCAGDETLCFEFETPHTAPVTCEITRWEDPFRQAAVSENIMQAACGL
MSVHGRSHRQPKPLGLNYVSTLTAALALQGSIAASIARLRGLPVSSSTVSMAAAGLLSMSQYIAGATASESPETTEAAEA
TRPLPGSSPACPPFVSLDGVIFELETLDAGPWQRFWSTLGVSSAAAGKGWRVFLLRYAKAASPLPDELSRAISRLTYHRI
SQVCARTGMAICPVRSIDDRAQDDDARQIWQQGPWAFSSFSSEPKPNGEYLLPAGGALPEDDLPLSGFTVIESCRRIQGP
LAGHLLALLGATVIRIEPPGGDPLRGMPPMAAGCSARFQALNHLKTVREIDIKSAAGKTEIRELARHADIFLHNWAPGKA
VLLNLDHGDLAAINPSLIYAYAGGWATDCAEHVSSNSMPGTDFMAQAYSGVAGKVGGGGSSRGGSLFTVLDVLGGVVAAQ
GVTIALLNRCMNNVGAKVTSSLMSAATLLCAEDFRDIYSLPASGSKPSTSIINDVYATRQGRIAIECPDVDTVLRLAEVL
DLTPGIENNGFQQCLSEVFLSKTADQWVELFQHAGIPSAVVIEDLVDLQTLAHLQPGLTSGSYTQVNSPWRFK
>Mature_633_residues
MKGPKSITPDFAPIASSFLYQSEALGMQTVADGNCAGDETLCFEFETPHTAPVTCEITRWEDPFRQAAVSENIMQAACGL
MSVHGRSHRQPKPLGLNYVSTLTAALALQGSIAASIARLRGLPVSSSTVSMAAAGLLSMSQYIAGATASESPETTEAAEA
TRPLPGSSPACPPFVSLDGVIFELETLDAGPWQRFWSTLGVSSAAAGKGWRVFLLRYAKAASPLPDELSRAISRLTYHRI
SQVCARTGMAICPVRSIDDRAQDDDARQIWQQGPWAFSSFSSEPKPNGEYLLPAGGALPEDDLPLSGFTVIESCRRIQGP
LAGHLLALLGATVIRIEPPGGDPLRGMPPMAAGCSARFQALNHLKTVREIDIKSAAGKTEIRELARHADIFLHNWAPGKA
VLLNLDHGDLAAINPSLIYAYAGGWATDCAEHVSSNSMPGTDFMAQAYSGVAGKVGGGGSSRGGSLFTVLDVLGGVVAAQ
GVTIALLNRCMNNVGAKVTSSLMSAATLLCAEDFRDIYSLPASGSKPSTSIINDVYATRQGRIAIECPDVDTVLRLAEVL
DLTPGIENNGFQQCLSEVFLSKTADQWVELFQHAGIPSAVVIEDLVDLQTLAHLQPGLTSGSYTQVNSPWRFK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=325, Percent_Identity=26.1538461538462, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=26.1538461538462, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI300863126, Length=318, Percent_Identity=24.5283018867925, Blast_Score=81, Evalue=3e-15,
Organism=Escherichia coli, GI87082093, Length=321, Percent_Identity=27.7258566978193, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788717, Length=233, Percent_Identity=32.1888412017167, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24585488, Length=304, Percent_Identity=26.3157894736842, Blast_Score=90, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24648431, Length=322, Percent_Identity=27.3291925465839, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 67088; Mature: 67088

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGPKSITPDFAPIASSFLYQSEALGMQTVADGNCAGDETLCFEFETPHTAPVTCEITRW
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCCCEEEEEECC
EDPFRQAAVSENIMQAACGLMSVHGRSHRQPKPLGLNYVSTLTAALALQGSIAASIARLR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GLPVSSSTVSMAAAGLLSMSQYIAGATASESPETTEAAEATRPLPGSSPACPPFVSLDGV
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEECCCE
IFELETLDAGPWQRFWSTLGVSSAAAGKGWRVFLLRYAKAASPLPDELSRAISRLTYHRI
EEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SQVCARTGMAICPVRSIDDRAQDDDARQIWQQGPWAFSSFSSEPKPNGEYLLPAGGALPE
HHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCEEECCCCCCCC
DDLPLSGFTVIESCRRIQGPLAGHLLALLGATVIRIEPPGGDPLRGMPPMAAGCSARFQA
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
LNHLKTVREIDIKSAAGKTEIRELARHADIFLHNWAPGKAVLLNLDHGDLAAINPSLIYA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCEEEECCCEEEE
YAGGWATDCAEHVSSNSMPGTDFMAQAYSGVAGKVGGGGSSRGGSLFTVLDVLGGVVAAQ
ECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GVTIALLNRCMNNVGAKVTSSLMSAATLLCAEDFRDIYSLPASGSKPSTSIINDVYATRQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
GRIAIECPDVDTVLRLAEVLDLTPGIENNGFQQCLSEVFLSKTADQWVELFQHAGIPSAV
CCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VIEDLVDLQTLAHLQPGLTSGSYTQVNSPWRFK
HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
>Mature Secondary Structure
MKGPKSITPDFAPIASSFLYQSEALGMQTVADGNCAGDETLCFEFETPHTAPVTCEITRW
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCCCEEEEEECC
EDPFRQAAVSENIMQAACGLMSVHGRSHRQPKPLGLNYVSTLTAALALQGSIAASIARLR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GLPVSSSTVSMAAAGLLSMSQYIAGATASESPETTEAAEATRPLPGSSPACPPFVSLDGV
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEECCCE
IFELETLDAGPWQRFWSTLGVSSAAAGKGWRVFLLRYAKAASPLPDELSRAISRLTYHRI
EEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SQVCARTGMAICPVRSIDDRAQDDDARQIWQQGPWAFSSFSSEPKPNGEYLLPAGGALPE
HHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCEEECCCCCCCC
DDLPLSGFTVIESCRRIQGPLAGHLLALLGATVIRIEPPGGDPLRGMPPMAAGCSARFQA
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
LNHLKTVREIDIKSAAGKTEIRELARHADIFLHNWAPGKAVLLNLDHGDLAAINPSLIYA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCEEEECCCEEEE
YAGGWATDCAEHVSSNSMPGTDFMAQAYSGVAGKVGGGGSSRGGSLFTVLDVLGGVVAAQ
ECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GVTIALLNRCMNNVGAKVTSSLMSAATLLCAEDFRDIYSLPASGSKPSTSIINDVYATRQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
GRIAIECPDVDTVLRLAEVLDLTPGIENNGFQQCLSEVFLSKTADQWVELFQHAGIPSAV
CCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VIEDLVDLQTLAHLQPGLTSGSYTQVNSPWRFK
HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]