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The map label for this gene is ykfC [C]

Identifier: 82702063

GI number: 82702063

Start: 1080363

End: 1081619

Strand: Reverse

Name: ykfC [C]

Synonym: Nmul_A0934

Alternate gene names: 82702063

Gene position: 1081619-1080363 (Counterclockwise)

Preceding gene: 82702066

Following gene: 82702062

Centisome position: 33.97

GC content: 40.18

Gene sequence:

>1257_bases
ATGGCAGAGCTTTATCGCAAGCTGTACAGTAACAATCGTCTAAGAAGTGCTTGGCAGTCCATATACGAAAACGGTATTTC
ATCTAAATCGCCTACAATTAGAACTGAAATCGAGCAGTTCTCCCTTTCATTAGAAAAAAACCTTCGGCGGATTGCCGATC
AGTTGAGAGAAAAACGGTACGTGTTTTCTCAAAGCTATGGGGTCGCGGTTAAGAAGAAGAATAACCCTAGCAAAAAGCGA
CCGATAGTAATATCCCCCATTCCTAATCGCATTGTTCAGCGAGCGTTGCTAGATGTTGTACAAGAAATTCCAAGTGTCCG
AGCTAAATTAGACTCTGGTTTTAATTTTGGCGGAATTGCAGAAATCGGTGTACCTCAAGCGATTCTCAAAGCTTATAAAA
CAGCCCTGGAAAAGCCCTATTTTATTCGAACTGACATTTGTGCCTTCTTCGATAATATTCCTCGTTCACAAGCATTAGAA
ATTATTACTTCTGCATCTAAGGATGATGATTTCAATACGTTGTTAACTCAAGCAACAACAACAGAGTTGAGTAATCTTAT
AACCTTAGGCCGTGACAAGGAACTTTTTCCATTGGAAGGAAAAGGTGTTGCTCAAGGTTCCTGCCTTTCTCCCGTACTTT
GCAATTTGCTTTTAGATGATTTTGATAAAAAAATGAATGCCCGAGGCATCGTCTGTATCCGATATATCGACGACTTCATT
TTGTTTGCACCAAGTGAATCAAAAGCATTTAAAGCCTTTGCTAGCGCATCAGCTTTCTTGGAAAAACTAAACTTAAGTGT
ATATGACCCTCGTCACTCTCCCGATAAGGCTGAGCATGGGGTATCCAATAAAGGATTTGAATTTCTAGGATGTAGTGTAA
GACCTGACCGCATTCGTCCTTCTGATAAGAGCATAAAAAGACTTAGAGATCGTGTGAATGAAATATTTGACAAGGTTATT
AAAAAATCCAGTAGTCCGCTCCGATGCATAAACGAAAAAACTACTTACAAGGATGCGCTAAATGAGGTTAGTAGCACTAT
TAGAGGATGGGGTAACACGTATTCCTTTTGTACAGATGATCACTTGATGATTAACCTAGATAGGTATATCAGCGAAAAAA
TTTTGAATTTCAATCGGAGATATAAGCAAAAAATCCGGGCCTTTTCCCCTGAAGATAAAAGGCGCCTGCTAGGGGTATTT
CTGCTCCAGGACTGTAAGAAGGACGAAAGCATGAGGGCCACTGTCACGGCTATTTAG

Upstream 100 bases:

>100_bases
GTGCCTAGGCCAGGCTGGGCCATTTATGGTTTCGCCTGAGAGATGAAGTGTCTTGAGCGGGTGGGTTGCTTGCCGATGGG
AGCCCCAACAAAAATAAATC

Downstream 100 bases:

>100_bases
TTTTATTAAATTTCTAAAATTAAAATGCGGCCTCGCCTACAAGTAGTGATTCAATTCAACTATCTCCCCTTTATTCGACA
AATTATTGATCTCCGGCCTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase/Maturase; Prophage; Reverse Transcriptase/Maturase Group FT II Introns; Reverse Transcriptase/Maturase Family Protein; CRISPR-Associated Cas1 Family Protein; CRISPR-Associated Protein; GBSi1 Group II Intron Maturase; Reverse Transcriptase

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MAELYRKLYSNNRLRSAWQSIYENGISSKSPTIRTEIEQFSLSLEKNLRRIADQLREKRYVFSQSYGVAVKKKNNPSKKR
PIVISPIPNRIVQRALLDVVQEIPSVRAKLDSGFNFGGIAEIGVPQAILKAYKTALEKPYFIRTDICAFFDNIPRSQALE
IITSASKDDDFNTLLTQATTTELSNLITLGRDKELFPLEGKGVAQGSCLSPVLCNLLLDDFDKKMNARGIVCIRYIDDFI
LFAPSESKAFKAFASASAFLEKLNLSVYDPRHSPDKAEHGVSNKGFEFLGCSVRPDRIRPSDKSIKRLRDRVNEIFDKVI
KKSSSPLRCINEKTTYKDALNEVSSTIRGWGNTYSFCTDDHLMINLDRYISEKILNFNRRYKQKIRAFSPEDKRRLLGVF
LLQDCKKDESMRATVTAI

Sequences:

>Translated_418_residues
MAELYRKLYSNNRLRSAWQSIYENGISSKSPTIRTEIEQFSLSLEKNLRRIADQLREKRYVFSQSYGVAVKKKNNPSKKR
PIVISPIPNRIVQRALLDVVQEIPSVRAKLDSGFNFGGIAEIGVPQAILKAYKTALEKPYFIRTDICAFFDNIPRSQALE
IITSASKDDDFNTLLTQATTTELSNLITLGRDKELFPLEGKGVAQGSCLSPVLCNLLLDDFDKKMNARGIVCIRYIDDFI
LFAPSESKAFKAFASASAFLEKLNLSVYDPRHSPDKAEHGVSNKGFEFLGCSVRPDRIRPSDKSIKRLRDRVNEIFDKVI
KKSSSPLRCINEKTTYKDALNEVSSTIRGWGNTYSFCTDDHLMINLDRYISEKILNFNRRYKQKIRAFSPEDKRRLLGVF
LLQDCKKDESMRATVTAI
>Mature_417_residues
AELYRKLYSNNRLRSAWQSIYENGISSKSPTIRTEIEQFSLSLEKNLRRIADQLREKRYVFSQSYGVAVKKKNNPSKKRP
IVISPIPNRIVQRALLDVVQEIPSVRAKLDSGFNFGGIAEIGVPQAILKAYKTALEKPYFIRTDICAFFDNIPRSQALEI
ITSASKDDDFNTLLTQATTTELSNLITLGRDKELFPLEGKGVAQGSCLSPVLCNLLLDDFDKKMNARGIVCIRYIDDFIL
FAPSESKAFKAFASASAFLEKLNLSVYDPRHSPDKAEHGVSNKGFEFLGCSVRPDRIRPSDKSIKRLRDRVNEIFDKVIK
KSSSPLRCINEKTTYKDALNEVSSTIRGWGNTYSFCTDDHLMINLDRYISEKILNFNRRYKQKIRAFSPEDKRRLLGVFL
LQDCKKDESMRATVTAI

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47614; Mature: 47483

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELYRKLYSNNRLRSAWQSIYENGISSKSPTIRTEIEQFSLSLEKNLRRIADQLREKRY
CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFSQSYGVAVKKKNNPSKKRPIVISPIPNRIVQRALLDVVQEIPSVRAKLDSGFNFGGIA
HHHCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EIGVPQAILKAYKTALEKPYFIRTDICAFFDNIPRSQALEIITSASKDDDFNTLLTQATT
HCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
TELSNLITLGRDKELFPLEGKGVAQGSCLSPVLCNLLLDDFDKKMNARGIVCIRYIDDFI
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHEECCCHH
LFAPSESKAFKAFASASAFLEKLNLSVYDPRHSPDKAEHGVSNKGFEFLGCSVRPDRIRP
EECCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCCC
SDKSIKRLRDRVNEIFDKVIKKSSSPLRCINEKTTYKDALNEVSSTIRGWGNTYSFCTDD
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCEECCC
HLMINLDRYISEKILNFNRRYKQKIRAFSPEDKRRLLGVFLLQDCKKDESMRATVTAI
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
>Mature Secondary Structure 
AELYRKLYSNNRLRSAWQSIYENGISSKSPTIRTEIEQFSLSLEKNLRRIADQLREKRY
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFSQSYGVAVKKKNNPSKKRPIVISPIPNRIVQRALLDVVQEIPSVRAKLDSGFNFGGIA
HHHCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EIGVPQAILKAYKTALEKPYFIRTDICAFFDNIPRSQALEIITSASKDDDFNTLLTQATT
HCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
TELSNLITLGRDKELFPLEGKGVAQGSCLSPVLCNLLLDDFDKKMNARGIVCIRYIDDFI
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHEECCCHH
LFAPSESKAFKAFASASAFLEKLNLSVYDPRHSPDKAEHGVSNKGFEFLGCSVRPDRIRP
EECCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCCC
SDKSIKRLRDRVNEIFDKVIKKSSSPLRCINEKTTYKDALNEVSSTIRGWGNTYSFCTDD
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCEECCC
HLMINLDRYISEKILNFNRRYKQKIRAFSPEDKRRLLGVFLLQDCKKDESMRATVTAI
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA