Click here to switch to the map view.

The map label for this gene is traC [H]

Identifier: 82702060

GI number: 82702060

Start: 1075595

End: 1078051

Strand: Reverse

Name: traC [H]

Synonym: Nmul_A0931

Alternate gene names: 82702060

Gene position: 1078051-1075595 (Counterclockwise)

Preceding gene: 82702061

Following gene: 82702058

Centisome position: 33.86

GC content: 53.72

Gene sequence:

>2457_bases
ATGATCAGAACATTTCTACCCCCCGATTTGGTCGAATTCATGCACCGACATCAGTACAGACCAGAACCGCTGAAGCTGAG
CGGAAGCGGGTTCCTCCGCTTTCCACTCGGCAACGAGGCCAATGGCAATACCAGCGGTTACGCCAAGCTTTTTCCCGACG
GGAACAGCGCGGTGTTTGGCGATTTTAAATCGGGAACGCAGATTATCTGGAACGCCAAAGATGAGAAGAGCTTATCACCT
CCCGAGCGTAGAGCACGCGAGGAGGCATTAAAGAAGGCCCGAGAGGAAATAGCTGAAGAACGGCGTCAGCTTCAGGTAGC
CGCTGCAAGGCGGGCAGCCGAAATTTACGCGGGCGCGAAAGAGGCAAGGACTGACCATTCTTACCTGCTCAGGAAATGTA
TCAAGCCGTGTGGTGGCATCAGGCAGCACGATAATCAGCTACTTGTTCCGGTTTACGTAGCCGATAAGCTTACAAGCCTC
CAATTCATCGAGGAGGACGGCACTAAACGATTCTTAAGTGGAGGTGAAATCAGCGGGGGCTGCTGTGTCCTAGGCGATCC
TGCCGATGTGATTTGCATTGCCGAAGGGTATGCCACGGGTTGCAGCATACATGAGGCGACAGGTCATGCTGTCGCCGTCG
CGTTCAACGCAGGCAATCTCACGTTAGTGGTGCAGACAATGCGGCAACGGTTTAAGGAGGCAACTCTCATCGTATGTAGT
GATAATGATCAGTGGACCGAGGGTAACCCGGGCCTGACCAAGGCTACGGAGGCGGCTCTTACCGTCGGCGGACTATTGGC
TGTCCCTGATTTTGCTGAGCGTGATATGAGTACTAGGCCGACCGACTTCAATGATCTGCATGTGCTATCGGGGAAGGGCA
TGGTAAATCAAGCCATCGCTGCAGCAAGGAAGGTAGGTGATCCACCCCGGCCTGTTTCAGATCCTCAGCTCACTCCTCAC
CTCATGTCACATCAAGCCCTTGTTCCAGCAGGTGATCAGGTCGGCTTGGATGGTTTACCCATTAACCTCCGGTCCCAGAC
AGATACGGAGGCTGCAACCGACGCTGAGACATCAGAAATAGCGAAGACAATAGAAGTGAGTAGGACGTTTAAGTCGGGCA
AGTGGGAGCAACCGGAAGCAATCAAGCAGGAGGATGCGCTCCTGGCTGGGGAATGTGACGCTCCACTTGCCCCGCCCAAG
ATGCCGGAAATAGGCTTTCCTCCGCTCATCCATGACATAGTCGAGGTGGCTTGCGCTAACAGCGAAGCCCATTGGGTGGC
GGTTGCTGCAAATGCCGTGGCCTACTTCAGCGCAATGACGGGCCGAGCATTATTCCAGTCTATAGGCGATGCGGTAATCC
ATTGCAGGCCCTTCCCACTTATCGTGGGCAAAAGCGGAAAGGCGCGCAAGGGTACGGCAGAATCGACTGTACGCAAGATC
TTCAGGCGCGCTAATGCGCTGATCAATGAACAGCGAGAGGTTGAGGAAAGCCTACGCTGCCATACGGGCGGTCTCTCCAC
AGGGGAAGGTATTGCCTGGGCCATTCGTGATCCAATTGAGGCGGATGAAAAAGGCAGGGGCGGCGACCCGGGTGTGACCG
ACAAGCGTCTACTGGCTATCGAGAGTGAATTTGATAATGTCCTCTCCCAGCTGCGGCGCGACAACAATACCTTGTCTGCC
ACTATCCGCAATCTGTTTGATGGCCGCGACATCGAACCGCTTACCAAAACCAACCCTACGCGGGCAACGCGGCCTCATGT
CTCGATTCTAGGGCACATTACCAGCCACGAACTGCGCGAGAAGGCGACTGCAAACGATGTGGCAAACGGACTGTTGAACC
GGTTCATGATTCTCCACGTGTATCGCCCCAAGCTAGTTGCCTTGCCTCTTCCAACTCCAGAGGCGAAGATTGAAGAGTTG
GCGCAGCGGGTAACCGACGCCATTATGGGTGTGACCCATGGGAATCTGCACGACGATAATCTGTATGAGGTTACCTTCAG
TGATGCTGCTCGCGACTTATGGGTGGAGCAATACGAAACCATAACGCGAGATCGCGAGGGCAAGGCAGGAAGCTTGCTGG
CCAGATCAGAGATGTATGCGCGAATGCTTGCAATGGTTTTTGCTGCAATGGACAAACGCCTCATCATTGAGCCAAGAGAT
CTTCATGCTGCTATTGCCTGGGTGGAATACTGGAATTCAAGCGTAACTTATGTCTTTAACTGTAGAGATGATGAAAGCGG
ACTGGATCCCTTCGAGGCTGAAGTGCTGGTTATCGTTACAAGAAATCCTGGCATCACGCTAACGAACCTGCGAAAGCACT
GGCCAAACAGTCGAAGGAAGCAGGTGGACAACGCGCTGAAAACTCTGTTGAATCTGGCACCGCCATTGATTGAACAGGAA
CAGGAACAAACCGGCGGACGACCGGCAACCCGATATTTCCCTTACGAAAAAAAGTAA

Upstream 100 bases:

>100_bases
GCCAACTATGCCAAGGTTGTGCAGCTAAACATCGTCGCGGGGGACGAAGACAAAGGGCAGTGTTAGCTGCTGTTCGGGAA
TTTCTGGCAAAGGAGGTGTC

Downstream 100 bases:

>100_bases
GAAAAGGTAGAAAAGCCAGCCCGCGCGGTATTGAGGTGGCAATTAAGGGGAAGAAAAGAGTAAAAAAAGGATAAGAGGGC
AAGTTAAACAGAGTAAATAC

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 818; Mature: 818

Protein sequence:

>818_residues
MIRTFLPPDLVEFMHRHQYRPEPLKLSGSGFLRFPLGNEANGNTSGYAKLFPDGNSAVFGDFKSGTQIIWNAKDEKSLSP
PERRAREEALKKAREEIAEERRQLQVAAARRAAEIYAGAKEARTDHSYLLRKCIKPCGGIRQHDNQLLVPVYVADKLTSL
QFIEEDGTKRFLSGGEISGGCCVLGDPADVICIAEGYATGCSIHEATGHAVAVAFNAGNLTLVVQTMRQRFKEATLIVCS
DNDQWTEGNPGLTKATEAALTVGGLLAVPDFAERDMSTRPTDFNDLHVLSGKGMVNQAIAAARKVGDPPRPVSDPQLTPH
LMSHQALVPAGDQVGLDGLPINLRSQTDTEAATDAETSEIAKTIEVSRTFKSGKWEQPEAIKQEDALLAGECDAPLAPPK
MPEIGFPPLIHDIVEVACANSEAHWVAVAANAVAYFSAMTGRALFQSIGDAVIHCRPFPLIVGKSGKARKGTAESTVRKI
FRRANALINEQREVEESLRCHTGGLSTGEGIAWAIRDPIEADEKGRGGDPGVTDKRLLAIESEFDNVLSQLRRDNNTLSA
TIRNLFDGRDIEPLTKTNPTRATRPHVSILGHITSHELREKATANDVANGLLNRFMILHVYRPKLVALPLPTPEAKIEEL
AQRVTDAIMGVTHGNLHDDNLYEVTFSDAARDLWVEQYETITRDREGKAGSLLARSEMYARMLAMVFAAMDKRLIIEPRD
LHAAIAWVEYWNSSVTYVFNCRDDESGLDPFEAEVLVIVTRNPGITLTNLRKHWPNSRRKQVDNALKTLLNLAPPLIEQE
QEQTGGRPATRYFPYEKK

Sequences:

>Translated_818_residues
MIRTFLPPDLVEFMHRHQYRPEPLKLSGSGFLRFPLGNEANGNTSGYAKLFPDGNSAVFGDFKSGTQIIWNAKDEKSLSP
PERRAREEALKKAREEIAEERRQLQVAAARRAAEIYAGAKEARTDHSYLLRKCIKPCGGIRQHDNQLLVPVYVADKLTSL
QFIEEDGTKRFLSGGEISGGCCVLGDPADVICIAEGYATGCSIHEATGHAVAVAFNAGNLTLVVQTMRQRFKEATLIVCS
DNDQWTEGNPGLTKATEAALTVGGLLAVPDFAERDMSTRPTDFNDLHVLSGKGMVNQAIAAARKVGDPPRPVSDPQLTPH
LMSHQALVPAGDQVGLDGLPINLRSQTDTEAATDAETSEIAKTIEVSRTFKSGKWEQPEAIKQEDALLAGECDAPLAPPK
MPEIGFPPLIHDIVEVACANSEAHWVAVAANAVAYFSAMTGRALFQSIGDAVIHCRPFPLIVGKSGKARKGTAESTVRKI
FRRANALINEQREVEESLRCHTGGLSTGEGIAWAIRDPIEADEKGRGGDPGVTDKRLLAIESEFDNVLSQLRRDNNTLSA
TIRNLFDGRDIEPLTKTNPTRATRPHVSILGHITSHELREKATANDVANGLLNRFMILHVYRPKLVALPLPTPEAKIEEL
AQRVTDAIMGVTHGNLHDDNLYEVTFSDAARDLWVEQYETITRDREGKAGSLLARSEMYARMLAMVFAAMDKRLIIEPRD
LHAAIAWVEYWNSSVTYVFNCRDDESGLDPFEAEVLVIVTRNPGITLTNLRKHWPNSRRKQVDNALKTLLNLAPPLIEQE
QEQTGGRPATRYFPYEKK
>Mature_818_residues
MIRTFLPPDLVEFMHRHQYRPEPLKLSGSGFLRFPLGNEANGNTSGYAKLFPDGNSAVFGDFKSGTQIIWNAKDEKSLSP
PERRAREEALKKAREEIAEERRQLQVAAARRAAEIYAGAKEARTDHSYLLRKCIKPCGGIRQHDNQLLVPVYVADKLTSL
QFIEEDGTKRFLSGGEISGGCCVLGDPADVICIAEGYATGCSIHEATGHAVAVAFNAGNLTLVVQTMRQRFKEATLIVCS
DNDQWTEGNPGLTKATEAALTVGGLLAVPDFAERDMSTRPTDFNDLHVLSGKGMVNQAIAAARKVGDPPRPVSDPQLTPH
LMSHQALVPAGDQVGLDGLPINLRSQTDTEAATDAETSEIAKTIEVSRTFKSGKWEQPEAIKQEDALLAGECDAPLAPPK
MPEIGFPPLIHDIVEVACANSEAHWVAVAANAVAYFSAMTGRALFQSIGDAVIHCRPFPLIVGKSGKARKGTAESTVRKI
FRRANALINEQREVEESLRCHTGGLSTGEGIAWAIRDPIEADEKGRGGDPGVTDKRLLAIESEFDNVLSQLRRDNNTLSA
TIRNLFDGRDIEPLTKTNPTRATRPHVSILGHITSHELREKATANDVANGLLNRFMILHVYRPKLVALPLPTPEAKIEEL
AQRVTDAIMGVTHGNLHDDNLYEVTFSDAARDLWVEQYETITRDREGKAGSLLARSEMYARMLAMVFAAMDKRLIIEPRD
LHAAIAWVEYWNSSVTYVFNCRDDESGLDPFEAEVLVIVTRNPGITLTNLRKHWPNSRRKQVDNALKTLLNLAPPLIEQE
QEQTGGRPATRYFPYEKK

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 90073; Mature: 90073

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTFLPPDLVEFMHRHQYRPEPLKLSGSGFLRFPLGNEANGNTSGYAKLFPDGNSAVFG
CCCCCCCHHHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCCEEE
DFKSGTQIIWNAKDEKSLSPPERRAREEALKKAREEIAEERRQLQVAAARRAAEIYAGAK
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EARTDHSYLLRKCIKPCGGIRQHDNQLLVPVYVADKLTSLQFIEEDGTKRFLSGGEISGG
HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCCCCCC
CCVLGDPADVICIAEGYATGCSIHEATGHAVAVAFNAGNLTLVVQTMRQRFKEATLIVCS
EEEECCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCEEEHHHHHHHHHHHCEEEEEC
DNDQWTEGNPGLTKATEAALTVGGLLAVPDFAERDMSTRPTDFNDLHVLSGKGMVNQAIA
CCCCCCCCCCCCCHHHHHHHHHCCCEECCCHHHCCCCCCCCCCCCEEEECCCCHHHHHHH
AARKVGDPPRPVSDPQLTPHLMSHQALVPAGDQVGLDGLPINLRSQTDTEAATDAETSEI
HHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHCCCHHHHH
AKTIEVSRTFKSGKWEQPEAIKQEDALLAGECDAPLAPPKMPEIGFPPLIHDIVEVACAN
HHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
SEAHWVAVAANAVAYFSAMTGRALFQSIGDAVIHCRPFPLIVGKSGKARKGTAESTVRKI
CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCHHHHHHHH
FRRANALINEQREVEESLRCHTGGLSTGEGIAWAIRDPIEADEKGRGGDPGVTDKRLLAI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
ESEFDNVLSQLRRDNNTLSATIRNLFDGRDIEPLTKTNPTRATRPHVSILGHITSHELRE
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KATANDVANGLLNRFMILHVYRPKLVALPLPTPEAKIEELAQRVTDAIMGVTHGNLHDDN
HHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
LYEVTFSDAARDLWVEQYETITRDREGKAGSLLARSEMYARMLAMVFAAMDKRLIIEPRD
EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHH
LHAAIAWVEYWNSSVTYVFNCRDDESGLDPFEAEVLVIVTRNPGITLTNLRKHWPNSRRK
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHCCCHHHH
QVDNALKTLLNLAPPLIEQEQEQTGGRPATRYFPYEKK
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRTFLPPDLVEFMHRHQYRPEPLKLSGSGFLRFPLGNEANGNTSGYAKLFPDGNSAVFG
CCCCCCCHHHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCCEEE
DFKSGTQIIWNAKDEKSLSPPERRAREEALKKAREEIAEERRQLQVAAARRAAEIYAGAK
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EARTDHSYLLRKCIKPCGGIRQHDNQLLVPVYVADKLTSLQFIEEDGTKRFLSGGEISGG
HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCCCCCC
CCVLGDPADVICIAEGYATGCSIHEATGHAVAVAFNAGNLTLVVQTMRQRFKEATLIVCS
EEEECCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCEEEHHHHHHHHHHHCEEEEEC
DNDQWTEGNPGLTKATEAALTVGGLLAVPDFAERDMSTRPTDFNDLHVLSGKGMVNQAIA
CCCCCCCCCCCCCHHHHHHHHHCCCEECCCHHHCCCCCCCCCCCCEEEECCCCHHHHHHH
AARKVGDPPRPVSDPQLTPHLMSHQALVPAGDQVGLDGLPINLRSQTDTEAATDAETSEI
HHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHCCCHHHHH
AKTIEVSRTFKSGKWEQPEAIKQEDALLAGECDAPLAPPKMPEIGFPPLIHDIVEVACAN
HHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
SEAHWVAVAANAVAYFSAMTGRALFQSIGDAVIHCRPFPLIVGKSGKARKGTAESTVRKI
CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCHHHHHHHH
FRRANALINEQREVEESLRCHTGGLSTGEGIAWAIRDPIEADEKGRGGDPGVTDKRLLAI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
ESEFDNVLSQLRRDNNTLSATIRNLFDGRDIEPLTKTNPTRATRPHVSILGHITSHELRE
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KATANDVANGLLNRFMILHVYRPKLVALPLPTPEAKIEELAQRVTDAIMGVTHGNLHDDN
HHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
LYEVTFSDAARDLWVEQYETITRDREGKAGSLLARSEMYARMLAMVFAAMDKRLIIEPRD
EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHH
LHAAIAWVEYWNSSVTYVFNCRDDESGLDPFEAEVLVIVTRNPGITLTNLRKHWPNSRRK
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHCCCHHHH
QVDNALKTLLNLAPPLIEQEQEQTGGRPATRYFPYEKK
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]