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The map label for this gene is rtcB [C]

Identifier: 82702032

GI number: 82702032

Start: 1027803

End: 1029230

Strand: Direct

Name: rtcB [C]

Synonym: Nmul_A0903

Alternate gene names: 82702032

Gene position: 1027803-1029230 (Clockwise)

Preceding gene: 82702031

Following gene: 82702033

Centisome position: 32.28

GC content: 59.52

Gene sequence:

>1428_bases
ATGAATCTGGAGCGCCTACGTCAACTGCAACCCTGCCTGTGGACATTGCCGCGCGCACCGGGCGAAGAACGCGCGCAGGT
CCTCCTGTATGGCAGCGCGCCCTTGCTCGTCAGCATGGACGACAAGGTACTCGAGCAGATCGCCAACGTTGCTTCCCTGC
CGGGGCTGGTTGGAGCGGCAATGACCATGCCGGATGCGCATTGGGGATATGGTTTTCCCATAGGGGGTGTTGCTGCTTTC
GATGCTGAGCAGGGGGGGGTGATTTCCGCAGGCGGGGTCGGCTTCGATATTTCGTGCGGCATACGCTGTCTGCGCAGCAA
TCTGAATCTGGAGGATGCGGTAGAGCATTTTCCCCAGCTCGGAAAAGCCTTGTTCCGCGCTATCCCTGCTGGAGTGGGCG
AGGAGGGCGAGATCAAGCTGAACCCGGAGCAGCTCGACCAGGTGATGCACGGCGGTGCACACTGGGCGGTACAGCAAGGC
TACGGCACTCCAGCAGATCTGGATTATGTTGAAGAACAGGGGCGGGTAGCAGGAGCGATCCCGGAAAACGTATCCGAACT
TGCCAAAAAGCGCCAGCGCGGCGAGATGGGCACGCTCGGCTCAGGCAATCATTACCTGGAAGTACAGGTGGTGGACCGCA
TCTTCGATCCTGGCGTCGCGCTGGCGCTTGGCCTGCATGAAGGACAAATCCTGATTTCGATACATTGCGGTTCGCGTGGG
CTGGGGCACCAGATCGGTACCGATTATCTGGTGCTATTGGCAAAAGCAGCCAGCCGCTCGGGCATTCATTTACCCGATCG
TGAACTCGCTTGCGCGCCTGTCAAATCCCCCGAAGGCCAGCAATATATCGGCGCGATGAATGCTGCGATCAATTGCGCGC
TTGCCAACCGGCAAATCCTGACGCATCTTACGCGCTCCGTATTTACGGAAATTTATCCCCAGGCCGAGCTTGAAACCTTG
TTTGATGTTTCGCACAATACCTGCAAGGCCGAAACCCATCAGATCGACGGTGAATCGAGGTTGCTGTATGTGCACCGCAA
GGGCGCTACACGCGCATTCGGCCCGGGCCACCCCATGCTGCCGGAACGCTACCGCCAGGTAGGACAACCCGTCGTTATCG
GTGGAAGCATGGGAACAGGCTCCTACATTCTCGTTGGTGACAGCGAAAATCCCGCCTTCGCTTCTTCAAGCCACGGTGCA
GGCCGGGCCATGAGCCGGCACCAGGCACTCGCGCGATGGAAAGGACGTGCGCTGGTGGACGAGTTGGCGCAACAAGGTAT
TCTGATCCATACCCGCTCCATGCGAGGTGTGGCGGAAGAAGCCCCGGGCGCCTATAAGGATGTCGATCTGGTGGCGGAGG
CCACGGAAGAAGCCGGGCTCGCCCGGCGCGTCGCGTTTCTCCGACCCAAAGTCTGCGTTAAGGGTTAA

Upstream 100 bases:

>100_bases
CATGCTTTCTGTCAAACAAACCGGAGCAATGTGGGAAGTGCGGTGCATAGTGGATGTGTGAGATCATATAAATTGAACGA
TAGGAACGGCAGGAGGTGAC

Downstream 100 bases:

>100_bases
GGGTTGAGGATTAAGGAAGGGTGAACAAATTCCTGCCAGACGCGATGGACTTGACCGGGGATTCCTCGGCAATATAAAAA
CTTTTTTCAAGGGAGTGACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNLERLRQLQPCLWTLPRAPGEERAQVLLYGSAPLLVSMDDKVLEQIANVASLPGLVGAAMTMPDAHWGYGFPIGGVAAF
DAEQGGVISAGGVGFDISCGIRCLRSNLNLEDAVEHFPQLGKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQG
YGTPADLDYVEEQGRVAGAIPENVSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHEGQILISIHCGSRG
LGHQIGTDYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQILTHLTRSVFTEIYPQAELETL
FDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPMLPERYRQVGQPVVIGGSMGTGSYILVGDSENPAFASSSHGA
GRAMSRHQALARWKGRALVDELAQQGILIHTRSMRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG

Sequences:

>Translated_475_residues
MNLERLRQLQPCLWTLPRAPGEERAQVLLYGSAPLLVSMDDKVLEQIANVASLPGLVGAAMTMPDAHWGYGFPIGGVAAF
DAEQGGVISAGGVGFDISCGIRCLRSNLNLEDAVEHFPQLGKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQG
YGTPADLDYVEEQGRVAGAIPENVSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHEGQILISIHCGSRG
LGHQIGTDYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQILTHLTRSVFTEIYPQAELETL
FDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPMLPERYRQVGQPVVIGGSMGTGSYILVGDSENPAFASSSHGA
GRAMSRHQALARWKGRALVDELAQQGILIHTRSMRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG
>Mature_475_residues
MNLERLRQLQPCLWTLPRAPGEERAQVLLYGSAPLLVSMDDKVLEQIANVASLPGLVGAAMTMPDAHWGYGFPIGGVAAF
DAEQGGVISAGGVGFDISCGIRCLRSNLNLEDAVEHFPQLGKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQG
YGTPADLDYVEEQGRVAGAIPENVSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHEGQILISIHCGSRG
LGHQIGTDYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQILTHLTRSVFTEIYPQAELETL
FDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPMLPERYRQVGQPVVIGGSMGTGSYILVGDSENPAFASSSHGA
GRAMSRHQALARWKGRALVDELAQQGILIHTRSMRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=440, Percent_Identity=46.1363636363636, Blast_Score=395, Evalue=1e-110,
Organism=Escherichia coli, GI2367224, Length=444, Percent_Identity=29.7297297297297, Blast_Score=145, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17506665, Length=440, Percent_Identity=45.4545454545455, Blast_Score=384, Evalue=1e-107,
Organism=Drosophila melanogaster, GI24585217, Length=440, Percent_Identity=46.3636363636364, Blast_Score=385, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50900; Mature: 50900

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLERLRQLQPCLWTLPRAPGEERAQVLLYGSAPLLVSMDDKVLEQIANVASLPGLVGAA
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHCCHHHHHH
MTMPDAHWGYGFPIGGVAAFDAEQGGVISAGGVGFDISCGIRCLRSNLNLEDAVEHFPQL
HCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEHHHHHHHHHHCCCHHHHHHHHHHH
GKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQGYGTPADLDYVEEQGRVAGAI
HHHHHHHHCCCCCCCCEEEECHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCEECCC
PENVSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHEGQILISIHCGSRG
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHCCCEEEEEEECCCEEEEEEECCCCC
LGHQIGTDYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQIL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHEEHHHHHHHH
THLTRSVFTEIYPQAELETLFDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPML
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
PERYRQVGQPVVIGGSMGTGSYILVGDSENPAFASSSHGAGRAMSRHQALARWKGRALVD
HHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
ELAQQGILIHTRSMRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG
HHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLERLRQLQPCLWTLPRAPGEERAQVLLYGSAPLLVSMDDKVLEQIANVASLPGLVGAA
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHCCHHHHHH
MTMPDAHWGYGFPIGGVAAFDAEQGGVISAGGVGFDISCGIRCLRSNLNLEDAVEHFPQL
HCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEHHHHHHHHHHCCCHHHHHHHHHHH
GKALFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQGYGTPADLDYVEEQGRVAGAI
HHHHHHHHCCCCCCCCEEEECHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCEECCC
PENVSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHEGQILISIHCGSRG
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHCCCEEEEEEECCCEEEEEEECCCCC
LGHQIGTDYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNAAINCALANRQIL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHEEHHHHHHHH
THLTRSVFTEIYPQAELETLFDVSHNTCKAETHQIDGESRLLYVHRKGATRAFGPGHPML
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
PERYRQVGQPVVIGGSMGTGSYILVGDSENPAFASSSHGAGRAMSRHQALARWKGRALVD
HHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
ELAQQGILIHTRSMRGVAEEAPGAYKDVDLVAEATEEAGLARRVAFLRPKVCVKG
HHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA