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The map label for this gene is ydeL [H]

Identifier: 82701934

GI number: 82701934

Start: 917121

End: 918647

Strand: Reverse

Name: ydeL [H]

Synonym: Nmul_A0801

Alternate gene names: 82701934

Gene position: 918647-917121 (Counterclockwise)

Preceding gene: 82701935

Following gene: 82701930

Centisome position: 28.85

GC content: 51.28

Gene sequence:

>1527_bases
ATGGCAATTCCCATTGAACTCGACCATAACAGTCGTCAATCGCTGCAAGGCCAGATTTTTGACCAGTTACGCCACCTTAT
CCTCGGCGGTAAGCTAAAACCCGGTACACTCATCCCGGCGAGTCGCGTACTTGCCGAACAACTGGGTATTTCTCGTAATA
CTGTTTTGCTGGTTTATGATCGTTTGATTGCCGAAGGCTATCTTCAGGCCCGGAAGGCAATTGGAACGTATGTAAACCTT
GAGCTTCCTGAAACCTGCCTTTCTGCCACCCGCAGGGTGACCCCCTCCTCTCCTGGTGATGAAGAATTTGTCAAACAGCC
GGTAATCCCATTTATCGGCCATATACACGCCAACATCACTGTTCAGCATCTCGATTTTGATTTTTGTCCGGATCGCATCG
GTCTCGACCTGTTTCCTCATAAGATATGGCGCCGCTTTGTAAATAAGACATTCATGTCTGCAAACATGCACTTCGAGGAG
TGTTGCGATCCCGGTGGGCTATCGGAACTGCGGGAAGTCATCGCTGCCCACCTTGGAGTCGCGCGGGGTATCAGCGTTTC
ATCAGATCAGATAATTATTACGGCCGGCTCTCAGGAGGGATTGAATCTTGCTGCTCGCCTTCTTGTAAAAGAGGGGACAA
TGGTTGCAACGGAAAATCCCTGCTACCAAGGCGCCACTTCGCTTTTCGAGAGTTACTATGCAAAATTGATTCCTGTGCCT
GTGGATGAGGCAGGGCTCGACGTTGAACAACTACCAAAGGAAGGAGTTGCTCTTTTATTTGTGACTCCTTCACATCAATT
TCCCCTGGGCTTCACCTTGCCCATCGAGCGCCGGTTGAAGCTCCTGGATTGGGCGCGGCGTTGTGGGGCATTCATCATAG
AGGACGATTACGATTCAGATTTTCGATATCGCGGATCGCCCCTGACCGCTCTCATGGGACTGGATGATTATGGTTGTGTC
ATGTATCTGGGTACTTTCTCCAAATCCATGGGTGCGGGCCTGCGCCTAGGCTACCTAGTGGTACCCAAAGCATTGATTCC
TGCTGCCCGTTCTGCAAAAGCTCTGCTTAATAATGGGCATGCCTGGCTGGATCAAGCAACTATGGCCGAATTTATCCGCA
GCGGCGCTTATGGCAATCATCTGAGACGCATGCGAAATATGTATGGTAAGCGCCGTGATTGTCTGGTGGAAGCACTGCGG
GAACATTTTGGGGCCATCCGCCTTAGCGGCCTTGAGAGTGGCCTGCATCTGGCATGGCATCTTCCTGATCACTATCCACC
TGCAGCTCAGCTCCAGACAATTGCATTACGTCATGGAGTAAGAATCTACTCGATCGGAGGGGGTACGGGCTATGATTACG
GTGGCTGTCGCTACAGCGCCCGTACGCTCGTGTTAGGTTTTTCTTCCCTCAACGAATACCAGATCCGGGCTGGTGTTCGG
CGAATTGCTGATGCTTTCGCGGATATGTCACTCAACCCCCTTTCCATGCGAGAGAAAGTGGATAACGTAGCGACACCCTC
TCTTTAG

Upstream 100 bases:

>100_bases
GAGATCGTATGTAGGCTTACGTTAATTATAAAAATATGTCAGAATCGATAATTTACCTGGAACAGAAATCCAGCGCGCGT
ATCTGCCGCCATGAATACAT

Downstream 100 bases:

>100_bases
GATAACCTGCCCTGCCGCTGTCCATATCAAAGTGTCTTATGGATGAGAAGGCACTCCTGTAGCATTTCTCTGGCCACTTT
CCGCTGTCTACAATCGATAT

Product: regulatory protein GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MAIPIELDHNSRQSLQGQIFDQLRHLILGGKLKPGTLIPASRVLAEQLGISRNTVLLVYDRLIAEGYLQARKAIGTYVNL
ELPETCLSATRRVTPSSPGDEEFVKQPVIPFIGHIHANITVQHLDFDFCPDRIGLDLFPHKIWRRFVNKTFMSANMHFEE
CCDPGGLSELREVIAAHLGVARGISVSSDQIIITAGSQEGLNLAARLLVKEGTMVATENPCYQGATSLFESYYAKLIPVP
VDEAGLDVEQLPKEGVALLFVTPSHQFPLGFTLPIERRLKLLDWARRCGAFIIEDDYDSDFRYRGSPLTALMGLDDYGCV
MYLGTFSKSMGAGLRLGYLVVPKALIPAARSAKALLNNGHAWLDQATMAEFIRSGAYGNHLRRMRNMYGKRRDCLVEALR
EHFGAIRLSGLESGLHLAWHLPDHYPPAAQLQTIALRHGVRIYSIGGGTGYDYGGCRYSARTLVLGFSSLNEYQIRAGVR
RIADAFADMSLNPLSMREKVDNVATPSL

Sequences:

>Translated_508_residues
MAIPIELDHNSRQSLQGQIFDQLRHLILGGKLKPGTLIPASRVLAEQLGISRNTVLLVYDRLIAEGYLQARKAIGTYVNL
ELPETCLSATRRVTPSSPGDEEFVKQPVIPFIGHIHANITVQHLDFDFCPDRIGLDLFPHKIWRRFVNKTFMSANMHFEE
CCDPGGLSELREVIAAHLGVARGISVSSDQIIITAGSQEGLNLAARLLVKEGTMVATENPCYQGATSLFESYYAKLIPVP
VDEAGLDVEQLPKEGVALLFVTPSHQFPLGFTLPIERRLKLLDWARRCGAFIIEDDYDSDFRYRGSPLTALMGLDDYGCV
MYLGTFSKSMGAGLRLGYLVVPKALIPAARSAKALLNNGHAWLDQATMAEFIRSGAYGNHLRRMRNMYGKRRDCLVEALR
EHFGAIRLSGLESGLHLAWHLPDHYPPAAQLQTIALRHGVRIYSIGGGTGYDYGGCRYSARTLVLGFSSLNEYQIRAGVR
RIADAFADMSLNPLSMREKVDNVATPSL
>Mature_507_residues
AIPIELDHNSRQSLQGQIFDQLRHLILGGKLKPGTLIPASRVLAEQLGISRNTVLLVYDRLIAEGYLQARKAIGTYVNLE
LPETCLSATRRVTPSSPGDEEFVKQPVIPFIGHIHANITVQHLDFDFCPDRIGLDLFPHKIWRRFVNKTFMSANMHFEEC
CDPGGLSELREVIAAHLGVARGISVSSDQIIITAGSQEGLNLAARLLVKEGTMVATENPCYQGATSLFESYYAKLIPVPV
DEAGLDVEQLPKEGVALLFVTPSHQFPLGFTLPIERRLKLLDWARRCGAFIIEDDYDSDFRYRGSPLTALMGLDDYGCVM
YLGTFSKSMGAGLRLGYLVVPKALIPAARSAKALLNNGHAWLDQATMAEFIRSGAYGNHLRRMRNMYGKRRDCLVEALRE
HFGAIRLSGLESGLHLAWHLPDHYPPAAQLQTIALRHGVRIYSIGGGTGYDYGGCRYSARTLVLGFSSLNEYQIRAGVRR
IADAFADMSLNPLSMREKVDNVATPSL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=260, Percent_Identity=24.2307692307692, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI33469970, Length=260, Percent_Identity=24.2307692307692, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1787710, Length=456, Percent_Identity=27.8508771929825, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790797, Length=416, Percent_Identity=27.6442307692308, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 56241; Mature: 56109

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPIELDHNSRQSLQGQIFDQLRHLILGGKLKPGTLIPASRVLAEQLGISRNTVLLVYD
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEHH
RLIAEGYLQARKAIGTYVNLELPETCLSATRRVTPSSPGDEEFVKQPVIPFIGHIHANIT
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCEECEEE
VQHLDFDFCPDRIGLDLFPHKIWRRFVNKTFMSANMHFEECCDPGGLSELREVIAAHLGV
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHH
ARGISVSSDQIIITAGSQEGLNLAARLLVKEGTMVATENPCYQGATSLFESYYAKLIPVP
HCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCC
VDEAGLDVEQLPKEGVALLFVTPSHQFPLGFTLPIERRLKLLDWARRCGAFIIEDDYDSD
CCCCCCCHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEECCCCCC
FRYRGSPLTALMGLDDYGCVMYLGTFSKSMGAGLRLGYLVVPKALIPAARSAKALLNNGH
CEECCCCCEEEECCCCCCCEEEEHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCC
AWLDQATMAEFIRSGAYGNHLRRMRNMYGKRRDCLVEALREHFGAIRLSGLESGLHLAWH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEE
LPDHYPPAAQLQTIALRHGVRIYSIGGGTGYDYGGCRYSARTLVLGFSSLNEYQIRAGVR
CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECEEEEEECCCCCHHHHHHHHH
RIADAFADMSLNPLSMREKVDNVATPSL
HHHHHHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIPIELDHNSRQSLQGQIFDQLRHLILGGKLKPGTLIPASRVLAEQLGISRNTVLLVYD
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEHH
RLIAEGYLQARKAIGTYVNLELPETCLSATRRVTPSSPGDEEFVKQPVIPFIGHIHANIT
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCEECEEE
VQHLDFDFCPDRIGLDLFPHKIWRRFVNKTFMSANMHFEECCDPGGLSELREVIAAHLGV
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHH
ARGISVSSDQIIITAGSQEGLNLAARLLVKEGTMVATENPCYQGATSLFESYYAKLIPVP
HCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCC
VDEAGLDVEQLPKEGVALLFVTPSHQFPLGFTLPIERRLKLLDWARRCGAFIIEDDYDSD
CCCCCCCHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEECCCCCC
FRYRGSPLTALMGLDDYGCVMYLGTFSKSMGAGLRLGYLVVPKALIPAARSAKALLNNGH
CEECCCCCEEEECCCCCCCEEEEHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCC
AWLDQATMAEFIRSGAYGNHLRRMRNMYGKRRDCLVEALREHFGAIRLSGLESGLHLAWH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEE
LPDHYPPAAQLQTIALRHGVRIYSIGGGTGYDYGGCRYSARTLVLGFSSLNEYQIRAGVR
CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECEEEEEECCCCCHHHHHHHHH
RIADAFADMSLNPLSMREKVDNVATPSL
HHHHHHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]