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The map label for this gene is rimM

Identifier: 82701704

GI number: 82701704

Start: 657071

End: 657577

Strand: Direct

Name: rimM

Synonym: Nmul_A0570

Alternate gene names: 82701704

Gene position: 657071-657577 (Clockwise)

Preceding gene: 82701703

Following gene: 82701705

Centisome position: 20.64

GC content: 56.41

Gene sequence:

>507_bases
ATGGTGATAATGGGCCGCGTTGCCGGTCCATATGCGGTAGCCGGCTGGATCAAGGTTTTTCCCTATACCGAATATGTGGA
TGGCTTGCTGGATTACCCGGACTGGTGGCTGGGCAGCGAGGGCGGCAAATGGCACAAATTCAAAGTGATCGAGGGCGAGG
TTCACGGGAGCGTATTGCTGGCCTCACTTGAACAATGTGCGGACCGTGACGCGGCTGCGCGGCTAAAGGGACTGAAGATC
GCCATTCCACGCAGGCTGCTGCCGGCATTGCCGGAAAGCGGCGAGGAAGGTTATTACTGGTCGGATCTCATTGGGCTTGC
AGTCATCAATCTGCAGGGTGAGGTGCTGGGTAAGGTGGCGGGGCTGCTGGAAACCGGAGCGAACGATGTGCTTCAGGTGC
AAAATCCGGAAGAAACCGAAAGACTGATACCTTTCATAGACCAGGTGATCATCAAAGTCGATCTGGCGGCGGGTCGGATT
ACGGTGGATTGGGGTCTGGACTACTGA

Upstream 100 bases:

>100_bases
AAAGGTGCGCAGCCGTCAGATACCGTGAAAAAGCTGATCAAGCAGTTTGATTCCAGACAAGAAGTCGCAGGAAGCTGAAT
CGGGCCAATCCCCCGAACCA

Downstream 100 bases:

>100_bases
TTATGACGTTTGATTTCGACGTTATCACCCTGTTCCCCGAGATGTTCAACGCTGTAACCAGGTACGGGGTAACCGGGCGG
GCGAATGAGAATGCCATCTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLLASLEQCADRDAAARLKGLKI
AIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVAGLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRI
TVDWGLDY

Sequences:

>Translated_168_residues
MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLLASLEQCADRDAAARLKGLKI
AIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVAGLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRI
TVDWGLDY
>Mature_168_residues
MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLLASLEQCADRDAAARLKGLKI
AIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVAGLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRI
TVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=37.2781065088757, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NITMU (Q2YBJ3)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_411270.1
- ProteinModelPortal:   Q2YBJ3
- SMR:   Q2YBJ3
- STRING:   Q2YBJ3
- GeneID:   3784790
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A0570
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q2YBJ3
- ProtClustDB:   PRK00122
- BioCyc:   NMUL323848:NMUL_A0570-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18493; Mature: 18493

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL
CEEECCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHH
ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA
HHHHHHHCCCHHHHHCCCEEECCHHHHHCCCCCCCCCCCHHHHHHHHEEECCHHHHHHHH
GLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRITVDWGLDY
HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCEEEEECCCCC
>Mature Secondary Structure
MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL
CEEECCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHH
ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA
HHHHHHHCCCHHHHHCCCEEECCHHHHHCCCCCCCCCCCHHHHHHHHEEECCHHHHHHHH
GLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRITVDWGLDY
HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA