| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
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The map label for this gene is lptD
Identifier: 82701655
GI number: 82701655
Start: 591768
End: 594557
Strand: Reverse
Name: lptD
Synonym: Nmul_A0521
Alternate gene names: 82701655
Gene position: 594557-591768 (Counterclockwise)
Preceding gene: 82701658
Following gene: 82701654
Centisome position: 18.67
GC content: 56.92
Gene sequence:
>2790_bases ATGAAATTGCGTTTTATCCGTTCCGCTGGCTGGTTGTTTTTGTTGTTTTGCCTTGCCTGCAATGCGCGTGCCGATCTGCC GCCGCTTTCTTCAAAGCCGGAGCAGGGACGCGCAACCCCTTCTGGTGAGGGTGACGATAAACCGGTGGTTATCGATACGG AACGCATCCGGGGCCATCATGAATACGAGTCAGGCACCAGAAGCGAGAGTGAATTGCGCAGTCGCTCGACCATTTCAACC GACCAGATAAAAAAACCCAACCAAAAAGCGGACCCCGCCGCAAAAGACACGCCATCCGCGCCTCAGCAGAACTATACACT ATCCCCCGCGATAAAAACCGACTCCCGGACAGGCACCTCAGCCCAGGAATCGGAGAAGGCGGAAAGTATGGTTTTACCGG GTGGCGTGGAACGCCTTCCCGGGCCTGCCGCAGAAGAAGGAGAGCCCAGGCTGCGCACCAGGACCCAGTCCGCACCGCGC ACTTTATCCGCGCAAAAGCGCGGGGAGAAGCCCGCGAAGACACCTGCACCGGCCGAAGCAGACCAAGATAGACCGGGGTT TGCAGAAGGCGAGCGCATTGGAGGTCACAGGGAAGAAGCAGGCGACGAAAAGCTGCGTCTTGCCGGCGAGACTGAGCCCG AGGCAATCGAGCAAAAACTGGCAGAAGCTGAAGCGGAAACGGACAAACAGTCCCCCGTGTTCGTGGTTGCGGATCGCTTG CAAGGCCACGTGGAGGAGGAAATCGAAGCGATAGGCAAGGCGGAACTGTCTGCCGGCCCTCAGTTTATTTCCGCCGAGCG GATGAAATACAACCAGGGCACCAACGATGCCGAAGCCCAGGGCAACGTCCGTGTGGAAAAGGAAGGTGACATCCTGGAAG GATCCGATCTCAAATTCAATCTGCTGAGCAAAACGGGCCAGTTAAGCGAACCCAGCTATCGTCTGAAGGATGCGAGCAGT CGCGGTTATGCGGGCATGCTCCTGTTCGAAGGCGAGAACCAGTACCGCCTGCAGAAGGCCAGTTATACCACGTGCCCCGT GGGAGACGACAGCTGGGTTCTCCAGGTGGCCGACCTGAAGCTCGACAATGACAAGAAAGTGGGCACCGCCAAAAATGTGA AGCTCACCTTCAAGGATGTGCCGATACTGTATACCCCCTGGATGAATTTCTCATACAGCGGCGAGCGCAAATCAGGATTG CTGGCGCCGACCTACGGTACCGGCAGCAGGACCGGCCTTGAACTGGCTGTACCCTTCTACTGGAACATCGCCCCCAACTA TGACGCCACGTTTTCCGCACGCCTGATGTCAAAGCGCGGCCTGGCGATCAACAACGAATTTCGCTTTCTGGGCCAAAACT CGAGCAGCAATCTGCTCGCCGACATCGTGCCTCGTGACCTGGATACGCAAACGACGCGGTGGCGCACGTCGTTCTGGCAC AATCATTATCTGGGCGCTGGTTTTTCCGCTCGCCTGGATTACAACAGGGTGTCGGATGCAACCTATTTTCGCGACTTTGG CAACAACCTGAATCTCACATCCCGCACCAACCTGCTGCAGCAGGGATTGCTGTCTTACAATCGCGGGCTGGGGGATGACG GCACATTTAACGTAACCTCGCTTGTCCAGAGCTTCCAGACGATTCAGGATCCCCTGGCCGCAATTGTCGTGCCTTACAAA CGCCTGCCCCAGGTGGGATTGAACGCGAATAAGCCGGACGTCTTCGGAACGGGGGTCGATGTCAATCTTTCCGGGAGCTG GACCAACTTCTCCCACCCCACCCTCGTCAACGGCAGCAGGACCGTGCTCTTCCCAAGCATGAGCTACCCTCTTCGCAATT CGTTCGGTTTCATCACGCCCAAGGTGGGGATGCACTACACCCGTTACAGCCTCGGGGAGGGTGCCGGCGTGTCCGAGGAA AACCCCACCCGCACCTTGCCGATATTCAGCCTCGACAGCGGGCTTGCCTTCGATCGCAAAATGTCGCTGGGCGGAGAAAG CTTTACGCAGACGCTCGAACCGCGGGTGTTCTATGTTTACGTCCCATTCCGCGCGCAAGATCAGTTGCCGAATTTCGATT CCGCCAAGACTGATTTCAGCTTTGCCCAGATGCTGGCGGAAAACCGTTTCAGCGGGAGCGACCGTATCAATGATGCCAAC CAGGTGACTTTTGCCCTGACGACCCGCCTGCTGGAATCCAGTACCGGGAGGGAGCGTTTGCGTTTGGCGGTCGGGCATCA ATTAAGCTTTATCGATCGCCGGATCACACTGGAGACCCCGCAAACCATCGATCGCCGACCTGATTTTATTGCCGCAGTGT CGGGTTTTCTTACACCGACCATCAGTACTGACACCAGCTTCCAGTTTGACCAGACGCGCCTGCTAGCGGATGTGGTCCGC TCGGGTGTGAGCTATCGTCCGGAGCCGGGTCGCGTGTTGAATTTCGGTTACCGTTTTACCCGGGATGTGCTGCATCAGGT GGATGCTTCCAGCCAATGGCGATGGTCGGAAAGATGGCAGACGGTGGCCCGCCTGAATTACTCGTTACAGGATAAGAGAA TTCTGGAAGGGCTGGCAGGAGTTGAGTATAATGCCTGCTGCTGGTCGTTGCGGTTTGTGCTCCAGCATTTGACCCTTGCT ACGCAGAAATCGACCACAGCGGCTTTTTTGCAACTTGAGTTGAACGGCCTGATGCAAATCGGATCGAACCCGTTGACCGT ATTGCAACGCAGCATTCCCGGGTATATCAGGACGGGTAGCCAGGGAAGCGGCTTGATAGAAGGGCCATAG
Upstream 100 bases:
>100_bases CCATACAGCAGCTTCCATACGGTGACGCGAGACTTATGAGCTTGAAAATAGGCATTCATCCATTTCCGGATGATATCGTT TTCAGGTTGAAGAACTTCAC
Downstream 100 bases:
>100_bases CACCTCGCATCTATCACTGTTCGCACGTCACGATCACGCTATCTCTCCCCTATTCCAGAAGCTTATTCACATGGGCACGA AATTGTCGTCGCGTTCCCCC
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein
Number of amino acids: Translated: 929; Mature: 929
Protein sequence:
>929_residues MKLRFIRSAGWLFLLFCLACNARADLPPLSSKPEQGRATPSGEGDDKPVVIDTERIRGHHEYESGTRSESELRSRSTIST DQIKKPNQKADPAAKDTPSAPQQNYTLSPAIKTDSRTGTSAQESEKAESMVLPGGVERLPGPAAEEGEPRLRTRTQSAPR TLSAQKRGEKPAKTPAPAEADQDRPGFAEGERIGGHREEAGDEKLRLAGETEPEAIEQKLAEAEAETDKQSPVFVVADRL QGHVEEEIEAIGKAELSAGPQFISAERMKYNQGTNDAEAQGNVRVEKEGDILEGSDLKFNLLSKTGQLSEPSYRLKDASS RGYAGMLLFEGENQYRLQKASYTTCPVGDDSWVLQVADLKLDNDKKVGTAKNVKLTFKDVPILYTPWMNFSYSGERKSGL LAPTYGTGSRTGLELAVPFYWNIAPNYDATFSARLMSKRGLAINNEFRFLGQNSSSNLLADIVPRDLDTQTTRWRTSFWH NHYLGAGFSARLDYNRVSDATYFRDFGNNLNLTSRTNLLQQGLLSYNRGLGDDGTFNVTSLVQSFQTIQDPLAAIVVPYK RLPQVGLNANKPDVFGTGVDVNLSGSWTNFSHPTLVNGSRTVLFPSMSYPLRNSFGFITPKVGMHYTRYSLGEGAGVSEE NPTRTLPIFSLDSGLAFDRKMSLGGESFTQTLEPRVFYVYVPFRAQDQLPNFDSAKTDFSFAQMLAENRFSGSDRINDAN QVTFALTTRLLESSTGRERLRLAVGHQLSFIDRRITLETPQTIDRRPDFIAAVSGFLTPTISTDTSFQFDQTRLLADVVR SGVSYRPEPGRVLNFGYRFTRDVLHQVDASSQWRWSERWQTVARLNYSLQDKRILEGLAGVEYNACCWSLRFVLQHLTLA TQKSTTAAFLQLELNGLMQIGSNPLTVLQRSIPGYIRTGSQGSGLIEGP
Sequences:
>Translated_929_residues MKLRFIRSAGWLFLLFCLACNARADLPPLSSKPEQGRATPSGEGDDKPVVIDTERIRGHHEYESGTRSESELRSRSTIST DQIKKPNQKADPAAKDTPSAPQQNYTLSPAIKTDSRTGTSAQESEKAESMVLPGGVERLPGPAAEEGEPRLRTRTQSAPR TLSAQKRGEKPAKTPAPAEADQDRPGFAEGERIGGHREEAGDEKLRLAGETEPEAIEQKLAEAEAETDKQSPVFVVADRL QGHVEEEIEAIGKAELSAGPQFISAERMKYNQGTNDAEAQGNVRVEKEGDILEGSDLKFNLLSKTGQLSEPSYRLKDASS RGYAGMLLFEGENQYRLQKASYTTCPVGDDSWVLQVADLKLDNDKKVGTAKNVKLTFKDVPILYTPWMNFSYSGERKSGL LAPTYGTGSRTGLELAVPFYWNIAPNYDATFSARLMSKRGLAINNEFRFLGQNSSSNLLADIVPRDLDTQTTRWRTSFWH NHYLGAGFSARLDYNRVSDATYFRDFGNNLNLTSRTNLLQQGLLSYNRGLGDDGTFNVTSLVQSFQTIQDPLAAIVVPYK RLPQVGLNANKPDVFGTGVDVNLSGSWTNFSHPTLVNGSRTVLFPSMSYPLRNSFGFITPKVGMHYTRYSLGEGAGVSEE NPTRTLPIFSLDSGLAFDRKMSLGGESFTQTLEPRVFYVYVPFRAQDQLPNFDSAKTDFSFAQMLAENRFSGSDRINDAN QVTFALTTRLLESSTGRERLRLAVGHQLSFIDRRITLETPQTIDRRPDFIAAVSGFLTPTISTDTSFQFDQTRLLADVVR SGVSYRPEPGRVLNFGYRFTRDVLHQVDASSQWRWSERWQTVARLNYSLQDKRILEGLAGVEYNACCWSLRFVLQHLTLA TQKSTTAAFLQLELNGLMQIGSNPLTVLQRSIPGYIRTGSQGSGLIEGP >Mature_929_residues MKLRFIRSAGWLFLLFCLACNARADLPPLSSKPEQGRATPSGEGDDKPVVIDTERIRGHHEYESGTRSESELRSRSTIST DQIKKPNQKADPAAKDTPSAPQQNYTLSPAIKTDSRTGTSAQESEKAESMVLPGGVERLPGPAAEEGEPRLRTRTQSAPR TLSAQKRGEKPAKTPAPAEADQDRPGFAEGERIGGHREEAGDEKLRLAGETEPEAIEQKLAEAEAETDKQSPVFVVADRL QGHVEEEIEAIGKAELSAGPQFISAERMKYNQGTNDAEAQGNVRVEKEGDILEGSDLKFNLLSKTGQLSEPSYRLKDASS RGYAGMLLFEGENQYRLQKASYTTCPVGDDSWVLQVADLKLDNDKKVGTAKNVKLTFKDVPILYTPWMNFSYSGERKSGL LAPTYGTGSRTGLELAVPFYWNIAPNYDATFSARLMSKRGLAINNEFRFLGQNSSSNLLADIVPRDLDTQTTRWRTSFWH NHYLGAGFSARLDYNRVSDATYFRDFGNNLNLTSRTNLLQQGLLSYNRGLGDDGTFNVTSLVQSFQTIQDPLAAIVVPYK RLPQVGLNANKPDVFGTGVDVNLSGSWTNFSHPTLVNGSRTVLFPSMSYPLRNSFGFITPKVGMHYTRYSLGEGAGVSEE NPTRTLPIFSLDSGLAFDRKMSLGGESFTQTLEPRVFYVYVPFRAQDQLPNFDSAKTDFSFAQMLAENRFSGSDRINDAN QVTFALTTRLLESSTGRERLRLAVGHQLSFIDRRITLETPQTIDRRPDFIAAVSGFLTPTISTDTSFQFDQTRLLADVVR SGVSYRPEPGRVLNFGYRFTRDVLHQVDASSQWRWSERWQTVARLNYSLQDKRILEGLAGVEYNACCWSLRFVLQHLTLA TQKSTTAAFLQLELNGLMQIGSNPLTVLQRSIPGYIRTGSQGSGLIEGP
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family
Homologues:
Organism=Escherichia coli, GI1786239, Length=690, Percent_Identity=25.9420289855072, Blast_Score=250, Evalue=3e-67,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): LPTD_NITMU (Q2YBP2)
Other databases:
- EMBL: CP000103 - RefSeq: YP_411221.1 - STRING: Q2YBP2 - GeneID: 3784510 - GenomeReviews: CP000103_GR - KEGG: nmu:Nmul_A0521 - eggNOG: COG1452 - HOGENOM: HBG701380 - OMA: TPYYWNI - PhylomeDB: Q2YBP2 - ProtClustDB: CLSK585519 - BioCyc: NMUL323848:NMUL_A0521-MONOMER - HAMAP: MF_01411 - InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543
Pfam domain/function: PF03968 OstA; PF04453 OstA_C
EC number: NA
Molecular weight: Translated: 103018; Mature: 103018
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRFIRSAGWLFLLFCLACNARADLPPLSSKPEQGRATPSGEGDDKPVVIDTERIRGHH CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCC EYESGTRSESELRSRSTISTDQIKKPNQKADPAAKDTPSAPQQNYTLSPAIKTDSRTGTS HHCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC AQESEKAESMVLPGGVERLPGPAAEEGEPRLRTRTQSAPRTLSAQKRGEKPAKTPAPAEA HHHHHHHHHEECCCCHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCC DQDRPGFAEGERIGGHREEAGDEKLRLAGETEPEAIEQKLAEAEAETDKQSPVFVVADRL CCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHH QGHVEEEIEAIGKAELSAGPQFISAERMKYNQGTNDAEAQGNVRVEKEGDILEGSDLKFN HCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCEEE LLSKTGQLSEPSYRLKDASSRGYAGMLLFEGENQYRLQKASYTTCPVGDDSWVLQVADLK EECCCCCCCCCCCEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEE LDNDKKVGTAKNVKLTFKDVPILYTPWMNFSYSGERKSGLLAPTYGTGSRTGLELAVPFY ECCCCCCCCCCCEEEEEECCCEEEECCCCCEECCCCCCCEEECCCCCCCCCCEEEEEEEE WNIAPNYDATFSARLMSKRGLAINNEFRFLGQNSSSNLLADIVPRDLDTQTTRWRTSFWH EECCCCCCCCHHHHHHHCCCCEECCCEEEEECCCCCCEEHHHCCCCCCCCCHHHHHHHHC NHYLGAGFSARLDYNRVSDATYFRDFGNNLNLTSRTNLLQQGLLSYNRGLGDDGTFNVTS CCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH LVQSFQTIQDPLAAIVVPYKRLPQVGLNANKPDVFGTGVDVNLSGSWTNFSHPTLVNGSR HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCEEECCCE TVLFPSMSYPLRNSFGFITPKVGMHYTRYSLGEGAGVSEENPTRTLPIFSLDSGLAFDRK EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC MSLGGESFTQTLEPRVFYVYVPFRAQDQLPNFDSAKTDFSFAQMLAENRFSGSDRINDAN CCCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH QVTFALTTRLLESSTGRERLRLAVGHQLSFIDRRITLETPQTIDRRPDFIAAVSGFLTPT HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEHCCEEEECCCHHHHCCCCHHHHHHHHHCCC ISTDTSFQFDQTRLLADVVRSGVSYRPEPGRVLNFGYRFTRDVLHQVDASSQWRWSERWQ CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHH TVARLNYSLQDKRILEGLAGVEYNACCWSLRFVLQHLTLATQKSTTAAFLQLELNGLMQI HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHC GSNPLTVLQRSIPGYIRTGSQGSGLIEGP CCCHHHHHHHHCCCEEEECCCCCCCCCCC >Mature Secondary Structure MKLRFIRSAGWLFLLFCLACNARADLPPLSSKPEQGRATPSGEGDDKPVVIDTERIRGHH CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCC EYESGTRSESELRSRSTISTDQIKKPNQKADPAAKDTPSAPQQNYTLSPAIKTDSRTGTS HHCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC AQESEKAESMVLPGGVERLPGPAAEEGEPRLRTRTQSAPRTLSAQKRGEKPAKTPAPAEA HHHHHHHHHEECCCCHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCC DQDRPGFAEGERIGGHREEAGDEKLRLAGETEPEAIEQKLAEAEAETDKQSPVFVVADRL CCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHH QGHVEEEIEAIGKAELSAGPQFISAERMKYNQGTNDAEAQGNVRVEKEGDILEGSDLKFN HCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCEEE LLSKTGQLSEPSYRLKDASSRGYAGMLLFEGENQYRLQKASYTTCPVGDDSWVLQVADLK EECCCCCCCCCCCEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEE LDNDKKVGTAKNVKLTFKDVPILYTPWMNFSYSGERKSGLLAPTYGTGSRTGLELAVPFY ECCCCCCCCCCCEEEEEECCCEEEECCCCCEECCCCCCCEEECCCCCCCCCCEEEEEEEE WNIAPNYDATFSARLMSKRGLAINNEFRFLGQNSSSNLLADIVPRDLDTQTTRWRTSFWH EECCCCCCCCHHHHHHHCCCCEECCCEEEEECCCCCCEEHHHCCCCCCCCCHHHHHHHHC NHYLGAGFSARLDYNRVSDATYFRDFGNNLNLTSRTNLLQQGLLSYNRGLGDDGTFNVTS CCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH LVQSFQTIQDPLAAIVVPYKRLPQVGLNANKPDVFGTGVDVNLSGSWTNFSHPTLVNGSR HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCEEECCCE TVLFPSMSYPLRNSFGFITPKVGMHYTRYSLGEGAGVSEENPTRTLPIFSLDSGLAFDRK EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC MSLGGESFTQTLEPRVFYVYVPFRAQDQLPNFDSAKTDFSFAQMLAENRFSGSDRINDAN CCCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH QVTFALTTRLLESSTGRERLRLAVGHQLSFIDRRITLETPQTIDRRPDFIAAVSGFLTPT HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEHCCEEEECCCHHHHCCCCHHHHHHHHHCCC ISTDTSFQFDQTRLLADVVRSGVSYRPEPGRVLNFGYRFTRDVLHQVDASSQWRWSERWQ CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHH TVARLNYSLQDKRILEGLAGVEYNACCWSLRFVLQHLTLATQKSTTAAFLQLELNGLMQI HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHC GSNPLTVLQRSIPGYIRTGSQGSGLIEGP CCCHHHHHHHHCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA