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The map label for this gene is nlpD [C]

Identifier: 82701631

GI number: 82701631

Start: 555579

End: 556661

Strand: Direct

Name: nlpD [C]

Synonym: Nmul_A0497

Alternate gene names: 82701631

Gene position: 555579-556661 (Clockwise)

Preceding gene: 82701630

Following gene: 82701632

Centisome position: 17.45

GC content: 54.2

Gene sequence:

>1083_bases
ATGAGCGCTACACGAATCAGGGATATGAGTCTGAACAGTAATCTTTCCGGTCTGGGCAAAGATCTTCCTCGCACATTTTT
CGCGCAGCGGCATATTCTCCCATACTGTCTGTCCCTCGCATTATGCTTGCTGATTGCAGGTTGTTCATCCACGCCTCGTC
AGGGGCCAATGAGTAACAAGGCCGTGCCGGACCGGCAAAAAAATGGCGTTTCAACCTCCCCTCAATCCCAGCGGCCTGGC
GTGCATATCGTTCGCAGAGGCGACACGCTCTACAGTATTGCGACGAGCAACAATATTAATCCCAGGGAGTTGGCGGCGTG
GAACAATCTCCCTGATCCAGGAGCAATCCGGATTGGCCAGGAGATCTTTTTATCCCGACCCGAGGGGCCGGTAGCGGCAC
AACCAACCCTGTTCGCCATTCAGGAGTCCGCCCCATCTTCGTCCGTAGTAGCGCCAGCATCGCCGGCACAACCCAGACAA
GACAGTATGCCGATGCCGGAAGCAAGACAACCGGTCCCGGTGGGAAAGGTGAAAACAGAACCAAAGGCGTTCAAGTTGCC
TTACTCGGAACAGGCCCTTGCGCAGGTGAAAAGCCGGGCGGATGCAGCTCTGCCGGTAACGGTGGTAAAGGTCGCGCCGG
CTGTCGAAAAAACAACGCCTGCCGAAATCAGCACGATTTCCATTCCTCCATCTGAAGCCATCAGAAATAATGCCCAGGGC
GAGTGGGTATGGCCTGCCAAAGGCAGGGTAGCAGACCTTTTTTCGGAAAGCACCAAAGGCATCGATATCGTCGGGATGAG
AGGACAAACGGTAGCCGCATCCGCAGGAGGGAAAGTGGTTTATAGCGGCGAGGGCCTACGCGGATACGGCAAACTGATCA
TTATCAAACATAGCGACACCTATCTCAGCGCCTATGCGCATAACAGCAAGCTCCTTGTGAAGGAAGGGGAGACGGTGATC
AAAGGACAGAAAATTGCTGAGATGGGAAGCACGGACGCCGGTCTTGTCAAGCTCCATTTCGAAATTCGGAAGAATGGCAA
ACCGGTCGATCCTCTGAAATATTTACCGGGTATTTCCGGATGA

Upstream 100 bases:

>100_bases
TGAGACAATACTGGACGAAGTCAAGTTTGTCCCAATGATACCGGGGATCTGGCAGCGTTAGGAAACCGCAACGATATCGA
GCAAGGGAAACGAGACAACA

Downstream 100 bases:

>100_bases
ATTGAGGATGAGCTCATGATGAACCAGCAAGAATACACTGACGAAGAAGAACTCTTCGAGAAGGAGGATTCACTGGAGCA
GGATGATGAGGCTGCCGACA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSATRIRDMSLNSNLSGLGKDLPRTFFAQRHILPYCLSLALCLLIAGCSSTPRQGPMSNKAVPDRQKNGVSTSPQSQRPG
VHIVRRGDTLYSIATSNNINPRELAAWNNLPDPGAIRIGQEIFLSRPEGPVAAQPTLFAIQESAPSSSVVAPASPAQPRQ
DSMPMPEARQPVPVGKVKTEPKAFKLPYSEQALAQVKSRADAALPVTVVKVAPAVEKTTPAEISTISIPPSEAIRNNAQG
EWVWPAKGRVADLFSESTKGIDIVGMRGQTVAASAGGKVVYSGEGLRGYGKLIIIKHSDTYLSAYAHNSKLLVKEGETVI
KGQKIAEMGSTDAGLVKLHFEIRKNGKPVDPLKYLPGISG

Sequences:

>Translated_360_residues
MSATRIRDMSLNSNLSGLGKDLPRTFFAQRHILPYCLSLALCLLIAGCSSTPRQGPMSNKAVPDRQKNGVSTSPQSQRPG
VHIVRRGDTLYSIATSNNINPRELAAWNNLPDPGAIRIGQEIFLSRPEGPVAAQPTLFAIQESAPSSSVVAPASPAQPRQ
DSMPMPEARQPVPVGKVKTEPKAFKLPYSEQALAQVKSRADAALPVTVVKVAPAVEKTTPAEISTISIPPSEAIRNNAQG
EWVWPAKGRVADLFSESTKGIDIVGMRGQTVAASAGGKVVYSGEGLRGYGKLIIIKHSDTYLSAYAHNSKLLVKEGETVI
KGQKIAEMGSTDAGLVKLHFEIRKNGKPVDPLKYLPGISG
>Mature_359_residues
SATRIRDMSLNSNLSGLGKDLPRTFFAQRHILPYCLSLALCLLIAGCSSTPRQGPMSNKAVPDRQKNGVSTSPQSQRPGV
HIVRRGDTLYSIATSNNINPRELAAWNNLPDPGAIRIGQEIFLSRPEGPVAAQPTLFAIQESAPSSSVVAPASPAQPRQD
SMPMPEARQPVPVGKVKTEPKAFKLPYSEQALAQVKSRADAALPVTVVKVAPAVEKTTPAEISTISIPPSEAIRNNAQGE
WVWPAKGRVADLFSESTKGIDIVGMRGQTVAASAGGKVVYSGEGLRGYGKLIIIKHSDTYLSAYAHNSKLLVKEGETVIK
GQKIAEMGSTDAGLVKLHFEIRKNGKPVDPLKYLPGISG

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=279, Percent_Identity=37.9928315412186, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI87082174, Length=149, Percent_Identity=47.6510067114094, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI87082297, Length=123, Percent_Identity=34.1463414634146, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 38428; Mature: 38296

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATRIRDMSLNSNLSGLGKDLPRTFFAQRHILPYCLSLALCLLIAGCSSTPRQGPMSNK
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AVPDRQKNGVSTSPQSQRPGVHIVRRGDTLYSIATSNNINPRELAAWNNLPDPGAIRIGQ
CCCCHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHCCCCCCCCCEEECH
EIFLSRPEGPVAAQPTLFAIQESAPSSSVVAPASPAQPRQDSMPMPEARQPVPVGKVKTE
HHEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKAFKLPYSEQALAQVKSRADAALPVTVVKVAPAVEKTTPAEISTISIPPSEAIRNNAQG
CCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHCCCCC
EWVWPAKGRVADLFSESTKGIDIVGMRGQTVAASAGGKVVYSGEGLRGYGKLIIIKHSDT
CEECCCCCCHHHHHHCCCCCEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEEEECCC
YLSAYAHNSKLLVKEGETVIKGQKIAEMGSTDAGLVKLHFEIRKNGKPVDPLKYLPGISG
EEEEEECCCEEEEECCCEEECCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
SATRIRDMSLNSNLSGLGKDLPRTFFAQRHILPYCLSLALCLLIAGCSSTPRQGPMSNK
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AVPDRQKNGVSTSPQSQRPGVHIVRRGDTLYSIATSNNINPRELAAWNNLPDPGAIRIGQ
CCCCHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHCCCCCCCCCEEECH
EIFLSRPEGPVAAQPTLFAIQESAPSSSVVAPASPAQPRQDSMPMPEARQPVPVGKVKTE
HHEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKAFKLPYSEQALAQVKSRADAALPVTVVKVAPAVEKTTPAEISTISIPPSEAIRNNAQG
CCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHCCCCC
EWVWPAKGRVADLFSESTKGIDIVGMRGQTVAASAGGKVVYSGEGLRGYGKLIIIKHSDT
CEECCCCCCHHHHHHCCCCCEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEEEECCC
YLSAYAHNSKLLVKEGETVIKGQKIAEMGSTDAGLVKLHFEIRKNGKPVDPLKYLPGISG
EEEEEECCCEEEEECCCEEECCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]