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The map label for this gene is atpD1 [H]

Identifier: 82701444

GI number: 82701444

Start: 332555

End: 333934

Strand: Direct

Name: atpD1 [H]

Synonym: Nmul_A0310

Alternate gene names: 82701444

Gene position: 332555-333934 (Clockwise)

Preceding gene: 82701443

Following gene: 82701445

Centisome position: 10.44

GC content: 55.14

Gene sequence:

>1380_bases
ATGAACCAGGGAAAAATTGTTCAGTGTATCGGCGCGGTGGTCGACGTCGAGTTTGCACGTGAAGAGATGCCCAAGGTATA
TGACGCGCTCGTTCTTGAGGGGTCGGAACTTACGCTCGAAGTGCAGCAGCAGCTGGGTGACGGCGTCGTTCGCACAATTG
CGCTCGGTTCCTCCGAGGGGTTGCGGCGCGGCATGATGGTAACAAACACCGGTGATCAGATCCGTGTTCCTGTCGGCACC
AAGACCCTGGGGCGGATCATGGATGTCCTGGGTACGCCAATAGACGAAATGGGACCTATCGGCGCCGAGCAGAACAGATC
GATTCATCAGAAAGCCCCCGCTTTTGACGAATTGTCCGCGTCCACCGAGCTGCTGGAAACAGGGATCAAGGTTATCGATC
TCGTTTGTCCCTTTGCCAAGGGTGGCAAGGTGGGATTGTTCGGCGGTGCTGGCGTAGGCAAAACCGTGAACATGATGGAG
CTGATCCGCAACATTGCCATCGAGCATAGTGGATATTCCGTATTTGCAGGCGTGGGGGAGCGTACTCGGGAAGGGAATGA
CTTCTACCATGAAATGAAGGATTCCAACGTACTCGACAAGGTTGCCCTGGTATACGGCCAGATGAATGAGCCTCCCGGTA
ACCGGTTGCGGGTGGCGCTTACAGGTCTGACCATGGCGGAACATTTCCGCGACGAAGGCAGGGACGTGTTGCTGTTCGTG
GATAATATCTATCGTTTCACCCTGGCGGGTACGGAAGTATCCGCGTTGCTGGGCCGGATGCCATCCGCCGTGGGTTATCA
GCCGACATTGGCTGAGGAAATGGGCCGTTTGCAGGAGCGCATTACCTCCACCAAGTCGGGCTCCATTACCTCCATTCAAG
CGGTATATGTGCCTGCGGACGATTTGACCGATCCATCGCCTGCTACAACCTTCGGCCACCTGGATGCTACCGTCGTGCTT
TCGCGTGATATTGCTTCGCTGGGGATCTATCCAGCGGTTGATCCTCTCGACTCGACCTCGCGTCAGCTTGATCCTCTCGT
GGTGGGCGAAGAGCACTACTCGACTGCCCGGGCAGTGCAGCAAACCCTGCAACGCTATAAGGAATTGCGCGATATCATCG
CAATTCTCGGAATGGATGAACTCTCTCCTGAAGATAAGCTGGCGGTGGCAAGGGCGCGCAAAATCCAGCGGTTCCTTTCA
CAACCCTTTAACGTGGCCGAAGTGTTTACCGGTGCACCGGGAAAATACGTACCTCTGAAAGAGACCATCAAAGGCTTCAA
GGGCATTGTGTCGGGAGAATATGACCATCTGCCCGAGCAGGCATTTTACATGGTGGGTGGGATAGACGAGGCGGTTGAAA
AAGCCAAAACCTTGCAATAA

Upstream 100 bases:

>100_bases
CAACAAATCGCGGCAGGCTGCCATTACCAAGGAGCTGTCCGAAATTGTCGGTGGCGCGGCGGCCGTTTGAATAATTTGAA
TTGATTTTTTGAGGAACAAT

Downstream 100 bases:

>100_bases
TCGAGTTGATGAATCGGGTGGCTGGATAAAGCAGTCATCCCGATTCAATGATGAATGGGAACTAAAATGGGCGTGTTTCA
CGTTGATATCGTCAGCGCGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MNQGKIVQCIGAVVDVEFAREEMPKVYDALVLEGSELTLEVQQQLGDGVVRTIALGSSEGLRRGMMVTNTGDQIRVPVGT
KTLGRIMDVLGTPIDEMGPIGAEQNRSIHQKAPAFDELSASTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGRDVLLFV
DNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFGHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPLVVGEEHYSTARAVQQTLQRYKELRDIIAILGMDELSPEDKLAVARARKIQRFLS
QPFNVAEVFTGAPGKYVPLKETIKGFKGIVSGEYDHLPEQAFYMVGGIDEAVEKAKTLQ

Sequences:

>Translated_459_residues
MNQGKIVQCIGAVVDVEFAREEMPKVYDALVLEGSELTLEVQQQLGDGVVRTIALGSSEGLRRGMMVTNTGDQIRVPVGT
KTLGRIMDVLGTPIDEMGPIGAEQNRSIHQKAPAFDELSASTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGRDVLLFV
DNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFGHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPLVVGEEHYSTARAVQQTLQRYKELRDIIAILGMDELSPEDKLAVARARKIQRFLS
QPFNVAEVFTGAPGKYVPLKETIKGFKGIVSGEYDHLPEQAFYMVGGIDEAVEKAKTLQ
>Mature_459_residues
MNQGKIVQCIGAVVDVEFAREEMPKVYDALVLEGSELTLEVQQQLGDGVVRTIALGSSEGLRRGMMVTNTGDQIRVPVGT
KTLGRIMDVLGTPIDEMGPIGAEQNRSIHQKAPAFDELSASTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGRDVLLFV
DNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFGHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPLVVGEEHYSTARAVQQTLQRYKELRDIIAILGMDELSPEDKLAVARARKIQRFLS
QPFNVAEVFTGAPGKYVPLKETIKGFKGIVSGEYDHLPEQAFYMVGGIDEAVEKAKTLQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=70.4741379310345, Blast_Score=647, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=321, Percent_Identity=26.4797507788162, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI4757810, Length=321, Percent_Identity=26.4797507788162, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI19913424, Length=323, Percent_Identity=27.8637770897833, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI19913428, Length=367, Percent_Identity=25.3405994550409, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913426, Length=398, Percent_Identity=24.1206030150754, Blast_Score=102, Evalue=7e-22,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=83.0434782608696, Blast_Score=768, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=324, Percent_Identity=30.8641975308642, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790172, Length=308, Percent_Identity=26.2987012987013, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=464, Percent_Identity=68.3189655172414, Blast_Score=630, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=360, Percent_Identity=28.0555555555556, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=356, Percent_Identity=26.9662921348315, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=321, Percent_Identity=26.1682242990654, Blast_Score=115, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71988063, Length=321, Percent_Identity=26.1682242990654, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=404, Percent_Identity=24.009900990099, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=343, Percent_Identity=23.3236151603499, Blast_Score=91, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=66.9584245076586, Blast_Score=617, Evalue=1e-177,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=26.0869565217391, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6319603, Length=376, Percent_Identity=26.3297872340426, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=25.7510729613734, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=68.3870967741936, Blast_Score=634, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=65.0214592274678, Blast_Score=596, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=349, Percent_Identity=26.9340974212034, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281361666, Length=401, Percent_Identity=25.6857855361596, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24646341, Length=401, Percent_Identity=25.6857855361596, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI17136796, Length=401, Percent_Identity=25.6857855361596, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583992, Length=354, Percent_Identity=27.683615819209, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583988, Length=352, Percent_Identity=26.9886363636364, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24583986, Length=352, Percent_Identity=26.9886363636364, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24583984, Length=352, Percent_Identity=26.9886363636364, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24658560, Length=321, Percent_Identity=26.1682242990654, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=51.6483516483517, Blast_Score=85, Evalue=9e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49866; Mature: 49866

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQGKIVQCIGAVVDVEFAREEMPKVYDALVLEGSELTLEVQQQLGDGVVRTIALGSSEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHEECCCCCH
LRRGMMVTNTGDQIRVPVGTKTLGRIMDVLGTPIDEMGPIGAEQNRSIHQKAPAFDELSA
HHCCEEEECCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHCCCHHHHHH
STELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGRDVLLFV
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEEEE
DNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKSGSITSIQAVYVPAD
ECEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGEEHYSTARAVQ
CCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
QTLQRYKELRDIIAILGMDELSPEDKLAVARARKIQRFLSQPFNVAEVFTGAPGKYVPLK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHH
ETIKGFKGIVSGEYDHLPEQAFYMVGGIDEAVEKAKTLQ
HHHHHHHHCCCCCHHCCCHHHHEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MNQGKIVQCIGAVVDVEFAREEMPKVYDALVLEGSELTLEVQQQLGDGVVRTIALGSSEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHEECCCCCH
LRRGMMVTNTGDQIRVPVGTKTLGRIMDVLGTPIDEMGPIGAEQNRSIHQKAPAFDELSA
HHCCEEEECCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHCCCHHHHHH
STELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGRDVLLFV
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEEEE
DNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKSGSITSIQAVYVPAD
ECEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGEEHYSTARAVQ
CCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
QTLQRYKELRDIIAILGMDELSPEDKLAVARARKIQRFLSQPFNVAEVFTGAPGKYVPLK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHH
ETIKGFKGIVSGEYDHLPEQAFYMVGGIDEAVEKAKTLQ
HHHHHHHHCCCCCHHCCCHHHHEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA