Click here to switch to the map view.

The map label for this gene is fimA [H]

Identifier: 82546661

GI number: 82546661

Start: 4416896

End: 4417444

Strand: Direct

Name: fimA [H]

Synonym: SBO_4364

Alternate gene names: 82546661

Gene position: 4416896-4417444 (Clockwise)

Preceding gene: 82546660

Following gene: 82546662

Centisome position: 97.72

GC content: 51.37

Gene sequence:

>549_bases
ATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGAC
GGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAA
TCGTTCAGTTAGGACAGGTTCGTACCGCATCGCTGGCACAGGAAGGAGCAACCAGTTCTGCTGTCGGTTTTAACATTCAG
CTGAATGATTGCGATACCAATGTTGCATCTAAAGCCGCAGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAA
CGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTACAGATCCTGGACAGAACGGGTGCTGCGC
TGACGCTGGATGGTGCGACATTCAGTGAGCAAACAACCCTGAATAACGGTACTAACACCATTCCGTTCCAGGCGCGTTAT
TATGCAACCGGTGTCGCAACCCCTGGCGCAGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAA

Upstream 100 bases:

>100_bases
AAAACTGTGCAGTGTTGGCAGTCAAACTCGTTGACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAG
TTTTTTTAAAGGAAAGCAGC

Downstream 100 bases:

>100_bases
CCTACCCAGGTTCAGGGACGTCATTACGGGCAGGGATGCCCACCCTTGTGCGATAAAAATAACGATGAAAAGGAAGAGAT
TATTTCTATTAGCGTCGTTG

Product: major type 1 subunit fimbrin

Products: NA

Alternate protein names: Type-1A pilin [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQ
LNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
YATGVATPGAANADATFKVQYQ

Sequences:

>Translated_182_residues
MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQ
LNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
YATGVATPGAANADATFKVQYQ
>Mature_182_residues
MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQ
LNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
YATGVATPGAANADATFKVQYQ

Specific function: Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790769, Length=182, Percent_Identity=97.2527472527473, Blast_Score=294, Evalue=2e-81,
Organism=Escherichia coli, GI87081753, Length=160, Percent_Identity=51.875, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI87082421, Length=183, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1786938, Length=190, Percent_Identity=32.6315789473684, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081804, Length=183, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786746, Length=168, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789422, Length=161, Percent_Identity=35.4037267080745, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790773, Length=185, Percent_Identity=33.5135135135135, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18208; Mature: 18208

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQIVQLGQV
CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECEEEEEEEEECCCCHHHHHHHCCC
RTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSAT
HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCC
NVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARYYATGVATPGAANADATFKVQ
CCEEEEEECCCCEEEECCCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEE
YQ
EC
>Mature Secondary Structure
MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQIVQLGQV
CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECEEEEEEEEECCCCHHHHHHHCCC
RTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSAT
HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCC
NVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARYYATGVATPGAANADATFKVQ
CCEEEEEECCCCEEEECCCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEE
YQ
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8636962; 11251843; 12657207 [H]